YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149064491
Organism:	Rattus norvegicus
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149064491.

Description	E-value	Query Range	Subject Range
SC11C_RAT - Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3	211.0	[0..1]	[192..1]
gi\|194214714 - gi\|194214714\|ref\|XP_001489335.2\| PREDICTED: similar to Signal peptidase complex catalytic subunit SE... tr\|M3W609\|M3W609... - Signal peptidase complex catalytic subunit SEC11 OS=Felis catus GN=SEC11C PE=3 SV=1 SC11C_CANLF - Signal peptidase complex catalytic subunit SEC11C OS=Canis lupus familiaris GN=SEC11C PE=1 SV=3	211.0	[0..1]	[192..1]
gi\|109122293 - gi\|109122293\|ref\|XP_001086617.1\| PREDICTED: similar to SEC11-like 3 isoform 2 [Macaca mulatta]	210.0	[0..1]	[192..1]
SEC11C - SEC11 homolog C (S. cerevisiae) SC11C_PONAB - Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3 SC11C_PONPY, SPC... - Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-) (SPase 21 kDa subunit) (SPC21) (SEC11-like 3...	210.0	[0..1]	[192..1]
gi\|86438376, gi\|... - gi\|86438376\|gb\|AAI12784.1\| SEC11 homolog C (S. cerevisiae) [Bos taurus], gi\|115496204\|ref\|NP_0010686...	208.0	[0..1]	[192..1]
gi\|34784421 - gi\|34784421\|gb\|AAH57885.1\| Sec11a protein [Mus musculus]	206.0	[0..1]	[177..85]
gi\|114658678 - gi\|114658678\|ref\|XP_510560.2\| PREDICTED: similar to SPC18 protein [Pan troglodytes]	198.0	[0..12]	[177..178]
gi\|50806598 - gi\|50806598\|ref\|XP_424458.1\| PREDICTED: similar to Microsomal signal peptidase 21 kDa subunit (SPase...	194.0	[0..17]	[192..2]
gi\|50540112, gi\|... - gi\|50540112\|ref\|NP_001002521.1\| SEC11-like 1 [Danio rerio], gi\|49901188\|gb\|AAH76276.1\| SEC11 homolog...	194.0	[0..13]	[191..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRAGAVGTH LPTSSLDIFG DLRKMNKRQL YYQVLNFAMI VSSALMIWKG LIVLTGSESP  60
   61 IVVVLSGSME PAFHRGDLLF LTNFREDPIR AGEIVVFKVE GRDIPIVHRV IKVHEKDNGD 120
  121 IKFLTKGDNN EVDDRGLYKE GQNWLEKKDV VGRARGFLPY VGMVTIIMND YPKFKYALLA 180
  181 VMGAYVLLKR ES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits