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View Structure Prediction Details

Protein: gi|149755726
Organism: Equus caballus
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149755726.

Description E-value Query
Range
Subject
Range
gi|73990618 - gi|73990618|ref|XP_853786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...
3.0E-40 [1..305] [120..424]
RBMX_RAT - RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1
2.0E-33 [1..367] [1..367]
RBMX_MACFA - RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1
5.0E-31 [1..391] [1..391]
gi|76658699, gi|... - gi|76658701|ref|XP_881201.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...
5.0E-31 [1..391] [1..391]
RBMX_MOUSE - RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1
1.0E-30 [1..391] [1..391]
gi|4504451, gi|3... - ref|NP_002130.1| RNA binding motif protein, X chromosome [Homo sapiens], gi|3256007|emb|CAA80599.1|...
1.0E-30 [1..391] [1..391]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEADRPGKL FIGGLNTETN EKALEAVFGK YGRIVEVLLM KDRETNKSRG FAFVTFESPA  60
   61 DAKDAARDMN GKSLDGKAIK VEQATKPSFE SGRRGPPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2fy1A
Description: No description for 2fy1A was found.

Predicted Domain #2
Region A:
Residues: [99-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPRSRGPPRG LRGGRGGSGG TRGPPSRGGH MDDGGYSMNF NMSSSRGPLP VKRGPPPRSG  60
   61 GPPPKRSAPS GPVRSSSGMG GRAPVSRGRD SYGGPPRREP LPSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [203-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDVYLSPRDD GYSTKDSYSS RDYPSSRDTR DYAPPPRDYT YRDYGHSSSR DDYPSRGYSD  60
   61 RDGYGRDRDY SDHPSGGSYR DSYESYGNSR SAPPTRGPPP SYGGSSRYDD YSSSRDGYGG 120
  121 SRDSYSSSRS DLYSSGRDRV GRQERGLPPS MERGYPPPRD SYSSSSRGAP RGGGRGGSRS 180
  181 DRGGGRSRY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle