YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151942586
Organism:	Saccharomyces cerevisiae YJM789
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151942586.

Description	E-value	Query Range	Subject Range
CBP3 - Mitochondrial protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome ... gi\|190407748 - gi\|190407748\|gb\|EDV11013.1\| protein CBP3, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] CBP3_YEAST - Protein CBP3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBP3 PE=1 SV... gi\|151942586 - gi\|151942586\|gb\|EDN60932.1\| cytochrome B mRNA processing [Saccharomyces cerevisiae YJM789]	0.0	[1..335]	[1..335]
cbp3 - ubiquinol cytochrome-c reductase assembly protein Cbp3 CBP3_SCHPO - CBP3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbp3 PE=3 SV=1	1.0E-66	[58..291]	[64..275]
UQCC - ubiquinol-cytochrome c reductase complex chaperone	2.0E-57	[115..290]	[115..277]
UQCC1_MOUSE - Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Mus musculus GN=Uqcc1 PE=1 SV=1	2.0E-56	[115..290]	[111..273]
UQCC1_XENLA - Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Xenopus laevis GN=uqcc1 PE=2 SV=1	7.0E-54	[115..290]	[16..178]
gi\|23014669 - gi\|23014669\|ref\|ZP_00054474.1\| hypothetical protein Magn03009118 [Magnetospirillum magnetotacticum M...	3.0E-46	[113..291]	[1..183]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSVNRFTSG RLPVFLRKSP FYYSRAYLHQ TCVFKQNKET AQDSPELLAK SSHLNSKPLD  60
   61 VSNKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVKTAQNKIP LAHSKYESSK YELPKWKEAL GELVIRAFHL DMDRVRAGPV AGSYYYKICK  60
   61 EQGLQYEDEP LSETAKYFYE DLKLPRTFSQ WFQITVLHEW ILFVRMRAMP FKYGRNYQQK 120
  121 LVDRTFSDIE LRLFEEMKVN SGRIADQYLK DFNTQLRGAI FAYDEGFATD DGTLATAVWR 180
  181 NLFGGRKNID MVHLESVVRY IYSQLYVLSR LSDREFATGK FKFVPPGVKV EKLTPKQEEE 240
  241 LKAKTIAKYE ALDKDPKTLP SERSRLSYTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits