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View Structure Prediction Details

Protein: gi|134286971, gi...
Organism: Lobularia maritima
Length: 93 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|134286971, gi....

Description E-value Query
Range
Subject
Range
gi|76613395 - gi|76613395|ref|XP_871507.1| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]
134.0 [0..3] [91..286]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGIKYAVFT DKSIRLLGKN QYTFNVESGS TRTEIKHWVE LFFGVKVIAM NSHRLPGKVK  60
   61 RMGPILGHTM HYRRMIITLQ PGYSIPPLRK KRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 1nwxR
Description: 50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 3.53227268665795 bayes_pls_golite062009
structural molecule activity 3.24319212599242 bayes_pls_golite062009
nucleic acid binding 0.0217942967105049 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle