YRC Public Data Repository - Protein Structure Prediction

Protein:	GNTP_ECOLI
Organism:	Escherichia coli
Length:	447 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GNTP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	213.0	[0..7]	[446..375]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	182.0	[0..56]	[443..1]
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	178.0	[0..8]	[447..948]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	168.0	[0..8]	[409..515]
gi\|84387730, gi\|... - gi\|84387730\|ref\|ZP_00990746.1\| C4-dicarboxylate transport protein [Vibrio splendidus 12B01], gi\|8437... gi\|218323197, gi... - gi\|218710178\|ref\|YP_002417799.1\| DctQ, TRAP-type C4-dicarboxylate transport system, large permease c...	166.0	[0..8]	[445..1]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	166.0	[0..8]	[441..500]
gi\|86147630, gi\|... - gi\|86147630\|ref\|ZP_01065939.1\| C4-dicarboxylate transport protein [Vibrio sp. MED222], gi\|85834541\|g...	165.0	[0..8]	[445..1]
gi\|34483879 - gi\|34483879\|emb\|CAE10875.1\| LARGE INTEGRAL C4-DICARBOXYLATE MEMBRANE TRANSPORT PROTEIN,PUTATIVE [Wol... gi\|34558160 - gi\|34558160\|ref\|NP_907975.1\| C4-dicarboxylate membrane transporter [Wolinella succinogenes DSM 1740]	165.0	[0..8]	[445..1]
gi\|254229910, gi... - gi\|75854030\|ref\|ZP_00761754.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	165.0	[0..10]	[445..3]
gi\|183179523, gi... - gi\|183179523\|ref\|ZP_02957734.1\| C4-dicarboxylate transport protein [Vibrio cholerae MZO-3], gi\|18301... gi\|254286861, gi... - gi\|254286861\|ref\|ZP_04961813.1\| C4-dicarboxylate transport protein [Vibrio cholerae AM-19226], gi\|19... gi\|153829247, gi... - gi\|153829247\|ref\|ZP_01981914.1\| C4-dicarboxylate transport protein [Vibrio cholerae 623-39], gi\|1488... gi\|227082057, gi... - gi\|227082057\|ref\|YP_002810608.1\| putative C4-dicarboxylate transport protein [Vibrio cholerae M66-2]... DCTM_VIBCH - C4-dicarboxylate TRAP transporter large permease protein DctM OS=Vibrio cholerae serotype O1 (strain... gi\|229507978, gi... - gi\|229507978\|ref\|ZP_04397483.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|11279707 - pir\|\|D82140 C4-dicarboxylate transport protein VC1927 [imported] - Vibrio cholerae (strain N16961 se... gi\|229515312, gi... - gi\|229515312\|ref\|ZP_04404772.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|229343611, gi... - gi\|229518922\|ref\|ZP_04408365.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|229529048, gi... - gi\|229529048\|ref\|ZP_04418438.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|75830742, gi\|... - gi\|75830742\|ref\|ZP_00760014.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|229607524, gi... - gi\|229607524\|ref\|YP_002878172.1\| TRAP-type C4-dicarboxylate transport system large permease componen... gi\|146316670, gi... - gi\|75827248\|ref\|ZP_00756683.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|121547941, gi... - gi\|121587840\|ref\|ZP_01677598.1\| C4-dicarboxylate transport protein [Vibrio cholerae 2740-80], gi\|121... gi\|254226477, gi... - gi\|75819053\|ref\|ZP_00749154.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|153217040, gi... - gi\|153217040\|ref\|ZP_01950804.1\| C4-dicarboxylate transport protein [Vibrio cholerae 1587], gi\|124113... gi\|229511785, gi... - gi\|229511785\|ref\|ZP_04401264.1\| TRAP-type C4-dicarboxylate transport system large permease component...	165.0	[0..8]	[445..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVLNILWVV FGIGLMLVLN LKFKINSMVA LLVAALSVGM LAGMDLMSLL HTMKAGFGNT  60
   61 LGELAIIVVF GAVIGKLMVD SGAAHQIAHT LLARLGLRYV QLSVIIIGLI FGLAMFYEVA 120
  121 FIMLAPLVIV IAAEAKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLKLAIPAV AAATTAHSLF PPQPGPVALV NAYGADMGMV YIYGVLVTIP SVICAGLILP  60
   61 KFLGNLERPT PSFLKADQPV DMNNLPSFGV SILVPLIPAI IMISTTIANI WLVKDTPAWE 120
  121 VVNF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [262-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGSSPIAMFI AMVVAFVLFG TARGHDMQWV MNAFESAVKS IAMVILIIGA GGVLKQTIID  60
   61 TGIGDTIGML MSHGNISPYI MAWLITVLIR LATGQGVVSA MTAAGIISAA ILDPATGQLV 120
  121 GVNPALLVLA TAAGSNTLTH INDASFWLFK GYFDLSVKDT LKTWGLLELV NSVVGLIIVL 180
  181 IISMVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits