YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145599945, gi...
Organism:	Yersinia pestis Pestoides F
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145599945, gi....

Description	E-value	Query Range	Subject Range
gi\|51588695, gi\|... - gi\|51595413\|ref\|YP_069604.1\| hypothetical protein YPTB1066 [Yersinia pseudotuberculosis IP 32953], g... gi\|186894440, gi... - gi\|186894440\|ref\|YP_001871552.1\| hypothetical protein YPTS_1119 [Yersinia pseudotuberculosis PB1/+],... Q66DI0\|Q66DI0_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	8.0E-86	[1..192]	[1..192]
gi\|37525177, gi\|... - gi\|37525177\|ref\|NP_928521.1\| hypothetical protein plu1209 [Photorhabdus luminescens subsp. laumondii...	1.0E-85	[2..191]	[54..242]
gi\|49613122, gi\|... - gi\|50122596\|ref\|YP_051763.1\| hypothetical protein ECA3675 [Pectobacterium atrosepticum SCRI1043], gi...	9.0E-76	[1..192]	[1..192]
gi\|152961936, gi... - gi\|77629870\|ref\|ZP_00792456.1\| hypothetical protein YpseI_01001217 [Yersinia pseudotuberculosis IP 3...	5.0E-68	[11..191]	[1..198]
gi\|229687951, gi... - gi\|229899006\|ref\|ZP_04514150.1\| hypothetical protein YPF_3453 [Yersinia pestis biovar Orientalis str... gi\|229838439, gi... - gi\|229838439\|ref\|ZP_04458598.1\| hypothetical protein YPH_0676 [Yersinia pestis biovar Orientalis str... gi\|21958141, gi\|... - gi\|22125269\|ref\|NP_668692.1\| hypothetical protein y1370 [Yersinia pestis KIM], gi\|21958141\|gb\|AAM849...	2.0E-52	[75..191]	[29..145]
gi\|218929923, gi... - gi\|218929923\|ref\|YP_002347798.1\| hypothetical protein YPO2863 [Yersinia pestis CO92], gi\|16123055\|re... gi\|149365323, gi... - gi\|149365323\|ref\|ZP_01887358.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291736\|... gi\|25510934 - pir\|\|AG0348 probable membrane protein YPO2863 [imported] - Yersinia pestis (strain CO92) gi\|89102432 - gi\|89102432\|ref\|ZP_01175066.1\| COG0651: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiport... gi\|77635270 - gi\|77635270\|ref\|ZP_00797356.1\| COG0651: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiport...	2.0E-52	[75..191]	[3..119]
gi\|108775085, gi... - gi\|108811437\|ref\|YP_647204.1\| membrane protein [Yersinia pestis Nepal516], gi\|108775085\|gb\|ABG17604.... gi\|108808297, gi... - gi\|108808297\|ref\|YP_652213.1\| hypothetical protein YPA_2303 [Yersinia pestis Antiqua], gi\|108780210\|... gi\|145211181, gi... - gi\|145599485\|ref\|YP_001163561.1\| membrane protein [Yersinia pestis Pestoides F], gi\|145211181\|gb\|ABP...	3.0E-52	[75..191]	[22..138]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYNSVLKTF VDDDYRLEDH LDFKKQHADI RYQKLHKQLN EMSDENMHAL LTIEEGEYFL  60
   61 KTLCNPNPHQ SWKDAIFSCT DPTSVFFGSL VESLSVSRIV FEIRGFGVTA TEYVGKNGSS 120
  121 YIKLSGYAGI RKYLDATRYL IDNPKILDIG IGTQGIENGI VRGARFCIVF SAAYRSVELL 180
  181 LKDEYGLADF LLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits