YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|152989544, gi...
Organism:	Pseudomonas aeruginosa PA7
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|152989544, gi....

Description	E-value	Query Range	Subject Range
gi\|116052894, gi... - gi\|116052894\|ref\|YP_793211.1\| preprotein translocase subunit SecG [Pseudomonas aeruginosa UCBPP-PA14...	7.0E-32	[1..129]	[1..129]
gi\|62129435, gi\|... - gi\|62181802\|ref\|YP_218219.1\| protein-export membrane protein [Salmonella enterica subsp. enterica se...	1.0E-26	[1..107]	[65..174]
gi\|88796600, gi\|... - gi\|88796600\|ref\|ZP_01112262.1\| protein-export membrane protein secG(General Secretory Pathway) [Alte...	2.0E-25	[1..124]	[1..130]
gi\|110807041, gi... - gi\|110807041\|ref\|YP_690561.1\| protein export - membrane protein [Shigella flexneri 5 str. 8401], gi\|...	3.0E-25	[1..105]	[25..130]
gi\|226721237, gi... - gi\|67158741\|ref\|ZP_00419602.1\| Preprotein translocase SecG subunit [Azotobacter vinelandii AvOP], gi... gi\|67158741 - gi\|67158741\|ref\|ZP_00419602.1\| Preprotein translocase SecG subunit [Azotobacter vinelandii AvOP]	4.0E-25	[3..129]	[5..129]
gi\|26110186, gi\|... - gi\|26249758\|ref\|NP_755798.1\| protein-export membrane protein [Escherichia coli CFT073], gi\|26110186\|... gi\|91212596, gi\|... - gi\|91212596\|ref\|YP_542582.1\| protein-export membrane protein SecG [Escherichia coli UTI89], gi\|91074...	5.0E-25	[1..105]	[16..121]
tr\|F3G3T0\|F3G3T0... - Preprotein translocase subunit SecG OS=Pseudomonas syringae pv. pisi str. 1704B GN=secG PE=4 SV=1 SECG_PSEU2 - Protein-export membrane protein SecG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=secG PE=... SECG_PSESY - (P95577) Protein-export membrane protein secG	6.0E-25	[1..129]	[1..126]
gi\|71734190, gi\|... - gi\|71734190\|ref\|YP_276314.1\| preprotein translocase subunit SecG [Pseudomonas syringae pv. phaseolic...	8.0E-25	[1..129]	[1..126]
gi\|197334714, gi... - gi\|197334714\|ref\|YP_002155238.1\| translocase [Vibrio fischeri MJ11], gi\|197316204\|gb\|ACH65651.1\| tra... gi\|59711090, gi\|... - gi\|59711090\|ref\|YP_203866.1\| preprotein translocase subunit SecG [Vibrio fischeri ES114], gi\|5947919...	2.0E-24	[2..115]	[1..109]
lcl\|NC_016856.1_... - [gene=secG] [protein=preprotein translocase subunit SecG] [protein_id=YP_005239469.2] [location=comp... gi\|213645862 - gi\|213645862\|ref\|ZP_03375915.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213865086 - gi\|213865086\|ref\|ZP_03387205.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|214000931 - gi\|214000931\|ref\|ZP_03411666.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|238910086 - gi\|238910086\|ref\|ZP_04653923.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|25306332, gi\|... - gi\|25306332\|pir\|\|AD0902 protein-export membrane protein [imported] - Salmonella enterica subsp. ente... gi\|16762055 - gi\|16762055\|ref\|NP_457672.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|16421850, gi\|... - gi\|16766589\|ref\|NP_462204.1\| preprotein translocase subunit SecG [Salmonella typhimurium LT2], gi\|16... gi\|29139178, gi\|... - gi\|29143544\|ref\|NP_806886.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|205337750, gi... - gi\|205337750\|gb\|EDZ24514.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205348487, gi... - gi\|205348487\|gb\|EDZ35118.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|168463486, gi... - gi\|195633471\|gb\|EDX51885.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|168819641, gi... - gi\|205343277\|gb\|EDZ30041.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205323209, gi... - gi\|205323209\|gb\|EDZ11048.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205331185, gi... - gi\|205331185\|gb\|EDZ17949.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205333739, gi... - gi\|205333739\|gb\|EDZ20503.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|197289167, gi... - gi\|197289167\|gb\|EDY28536.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|213029357 - gi\|213029357\|ref\|ZP_03343804.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213052985 - gi\|213052985\|ref\|ZP_03345863.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213425429 - gi\|213425429\|ref\|ZP_03358179.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213622801 - gi\|213622801\|ref\|ZP_03375584.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|199605998, gi... - gi\|200388900\|ref\|ZP_03215512.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|204928325, gi... - gi\|204928325\|ref\|ZP_03219525.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|205354194, gi... - gi\|205354194\|ref\|YP_002227995.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|206710344, gi... - gi\|207858541\|ref\|YP_002245192.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|197213750, gi... - gi\|197250047\|ref\|YP_002148217.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|197240846, gi... - gi\|197262591\|ref\|ZP_03162665.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|197364152, gi... - gi\|197364152\|ref\|YP_002143789.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|198245348, gi... - gi\|198245348\|ref\|YP_002217264.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|194446778, gi... - gi\|194446778\|ref\|YP_002042549.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|56129479, gi\|... - gi\|56415222\|ref\|YP_152297.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|194448171, gi... - gi\|194448171\|ref\|YP_002047320.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|194458337, gi... - gi\|194471973\|ref\|ZP_03077957.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|194710167, gi... - gi\|194734665\|ref\|YP_002116240.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en...	3.0E-24	[2..105]	[1..105]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKVVIVVH LLMALGLVGL ILVQHGKGAD AGASFGAGAS ATVFGSQGSA TFLSRITGIL  60
   61 AAVFFLTSLG LAYFAKEKSD ALQHIGLPDP AVLEQKQEKA PAADDVPVLQ EQSKPAESAG 120
  121 DVPAAPEQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2akhX
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits