YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHA_HAEDU
Organism:	Haemophilus ducreyi
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHA_HAEDU.

Description	E-value	Query Range	Subject Range
GMHA_HISS2 - Phosphoheptose isomerase OS=Histophilus somni (strain 2336) GN=gmhA PE=3 SV=1 gi\|53692692 - gi\|53692692\|ref\|ZP_00347388.1\| COG0279: Phosphoheptose isomerase [Haemophilus somnus 129PT]	172.0	[0..1]	[192..1]
GMHA_HAEIN - Phosphoheptose isomerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=gm... GMHA_HAEIN - Phosphoheptose isomerase OS=Haemophilus influenzae GN=gmhA PE=3 SV=1	172.0	[0..1]	[194..1]
GMHA_ACTSZ - Phosphoheptose isomerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=gmhA PE=3 SV=1	171.0	[0..1]	[192..1]
gi\|972899 - gi\|972899\|gb\|AAA95976.1\| Isn	171.0	[0..1]	[194..1]
GMHA_ACTP2 - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=gmhA PE=3 SV... GMHA_ACTP7 - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=gmhA PE=3 SV... gi\|32034150 - gi\|32034150\|ref\|ZP_00134382.1\| COG0279: Phosphoheptose isomerase [Actinobacillus pleuropneumoniae se... GMHA_ACTPJ - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=gmhA PE=3 SV...	171.0	[0..1]	[194..1]
gi\|46133333 - gi\|46133333\|ref\|ZP_00157018.2\| COG0279: Phosphoheptose isomerase [Haemophilus influenzae R2866] gi\|144983156 - gi\|144983156\|gb\|EDJ90651.1\| arginine transporter ATP-binding subunit [Haemophilus influenzae R3021] GMHA_HAEIG - Phosphoheptose isomerase OS=Haemophilus influenzae (strain PittGG) GN=gmhA PE=3 SV=1 gi\|145639299, gi... - gi\|145639299\|ref\|ZP_01794905.1\| DNA ligase [Haemophilus influenzae PittII], gi\|145271602\|gb\|EDK11513... gi\|145631229 - gi\|145631229\|ref\|ZP_01787002.1\| arginine transporter ATP-binding subunit [Haemophilus influenzae 22....	170.0	[0..1]	[194..1]
GMHA_HAEI8 - Phosphoheptose isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=gmhA PE=3 SV=1	170.0	[0..1]	[194..1]
gi\|42628860 - gi\|42628860\|ref\|ZP_00154413.1\| COG0279: Phosphoheptose isomerase [Haemophilus influenzae R2846]	170.0	[0..1]	[194..1]
GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida (strain Pm70) GN=gmhA PE=3 SV=1 GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida GN=gmhA PE=3 SV=1	168.0	[0..1]	[192..1]
gi\|113461381, gi... - gi\|113461381\|ref\|YP_719450.1\| phosphoheptose isomerase [Haemophilus somnus 129PT], gi\|112823424\|gb\|A...	165.0	[0..4]	[192..2]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLEQIKGEL QEAADVLAKF MADEKNIQLI QEAALLIANS FKQGGKVLSC GNGGSHCDAM  60
   61 HFAEELTGRY RENRPAYPAI AISDVSHLSC VSNDFGYEYV FSRYIEAVGQ TGDVLFGLST 120
  121 SGNSKNVLNA INIAKEKGMK VIALTGKDGG QMAGLADVEI RVPHFRYADR TQEIHIKVIH 180
  181 ILMMLIEFEM AKTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.045757
Match:	2i22A
Description:	No description for 2i22A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits