YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHA_ECOLI
Organism:	Escherichia coli
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHA_ECOLI.

Description	E-value	Query Range	Subject Range
GMHA_ACTSZ - Phosphoheptose isomerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=gmhA PE=3 SV=1	185.0	[0..1]	[192..1]
GMHA_HISS2 - Phosphoheptose isomerase OS=Histophilus somni (strain 2336) GN=gmhA PE=3 SV=1 gi\|53692692 - gi\|53692692\|ref\|ZP_00347388.1\| COG0279: Phosphoheptose isomerase [Haemophilus somnus 129PT]	183.0	[0..1]	[192..1]
gi\|117622526, gi... - gi\|117622526\|ref\|YP_851439.1\| phosphoheptose isomerase [Escherichia coli APEC O1], gi\|115511650\|gb\|A... gi\|91209310, gi\|... - gi\|91209310\|ref\|YP_539296.1\| phosphoheptose isomerase [Escherichia coli UTI89], gi\|91070884\|gb\|ABE05... gi\|226898970, gi... - gi\|237707760\|ref\|ZP_04538241.1\| phosphoheptose isomerase [Escherichia sp. 3_2_53FAA], gi\|226898970\|g...	183.0	[0..1]	[192..55]
gi\|26106668, gi\|... - gi\|26246270\|ref\|NP_752309.1\| phosphoheptose isomerase [Escherichia coli CFT073], gi\|26106668\|gb\|AAN7... gi\|24050495, gi\|... - ref\|NP_706225.1\| hypothetical protein SF0272 [Shigella flexneri 2a str. 301], gb\|AAN41932.1\| orf, c... gi\|124501579, gi... - gi\|124526885\|ref\|ZP_01698767.1\| phosphoheptose isomerase [Escherichia coli B], gi\|124501579\|gb\|EAY49...	182.0	[0..1]	[192..55]
GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida (strain Pm70) GN=gmhA PE=3 SV=1 GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida GN=gmhA PE=3 SV=1	182.0	[0..1]	[192..1]
gi\|110613913, gi... - gi\|110804365\|ref\|YP_687885.1\| phosphoheptose isomerase [Shigella flexneri 5 str. 8401], gi\|110613913...	182.0	[0..1]	[192..55]
GMHA_HAEIN - Phosphoheptose isomerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=gm... GMHA_HAEIN - Phosphoheptose isomerase OS=Haemophilus influenzae GN=gmhA PE=3 SV=1	181.0	[0..1]	[192..1]
gi\|972899 - gi\|972899\|gb\|AAA95976.1\| Isn	180.0	[0..1]	[192..1]
GMHA_SALCH - Phosphoheptose isomerase OS=Salmonella choleraesuis (strain SC-B67) GN=gmhA PE=3 SV=1 gi\|205343977, gi... - gi\|205343977\|gb\|EDZ30741.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar We... GMHA_SALPA - Phosphoheptose isomerase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=gmhA PE=3 SV=1 gi\|168465384, gi... - gi\|195631745\|gb\|EDX50265.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar Ne... gi\|168261275, gi... - gi\|205349772\|gb\|EDZ36403.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar Ha... gi\|168240049, gi... - gi\|205340285\|gb\|EDZ27049.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar He... GMHA_SALSV - Phosphoheptose isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=gmhA PE=3 SV=1 gi\|194471548, gi... - gi\|194471548\|ref\|ZP_03077532.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... GMHA_SALHS - Phosphoheptose isomerase OS=Salmonella heidelberg (strain SL476) GN=gmhA PE=3 SV=1 GMHA_SALNS - Phosphoheptose isomerase OS=Salmonella newport (strain SL254) GN=gmhA PE=3 SV=1 GMHA_SALPB - Phosphoheptose isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gmhA PE=3 SV=1 GMHA_SALPA - Phosphoheptose isomerase OS=Salmonella paratyphi A GN=gmhA PE=3 SV=1 GMHA_SALCH - Phosphoheptose isomerase OS=Salmonella choleraesuis GN=gmhA PE=3 SV=1 gi\|168238584, gi... - gi\|197288594\|gb\|EDY27971.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar Sc... gi\|205333485, gi... - gi\|205333485\|gb\|EDZ20249.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar Ke... gi\|167993328, gi... - gi\|205328612\|gb\|EDZ15376.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar 4,... gi\|167553104, gi... - gi\|205322369\|gb\|EDZ10208.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar Sa... gi\|213852828 - gi\|213852828\|ref\|ZP_03382360.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... gi\|213649646 - gi\|213649646\|ref\|ZP_03379699.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... gi\|213580163 - gi\|213580163\|ref\|ZP_03361989.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... gi\|213425137 - gi\|213425137\|ref\|ZP_03357887.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... gi\|238913300 - gi\|238913300\|ref\|ZP_04657137.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... gi\|214001719 - gi\|214001719\|ref\|ZP_03412454.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... gi\|199602041, gi... - gi\|200389596\|ref\|ZP_03216207.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... GMHA_SALTY - Phosphoheptose isomerase OS=Salmonella typhimurium GN=gmhA PE=3 SV=1 GMHA_SALPK - Phosphoheptose isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=gmhA PE=3 SV=1 gi\|197265479, gi... - gi\|197265479\|ref\|ZP_03165553.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... GMHA_SALA4 - Phosphoheptose isomerase OS=Salmonella agona (strain SL483) GN=gmhA PE=3 SV=1 gi\|213162134 - gi\|213162134\|ref\|ZP_03347844.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... GMHA_SALEP - Phosphoheptose isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=gmhA PE=3 SV=1 GMHA_SALG2 - Phosphoheptose isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gmhA PE=3 SV=1 GMHA_SALPB - Phosphoheptose isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gmhA PE=3 SV=1 gi\|204323803, gi... - gi\|204927138\|ref\|ZP_03218340.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serova... GMHA_SALCH - Phosphoheptose isomerase OS=Salmonella choleraesuis GN=gmhA PE=3 SV=1 GMHA_SALTY - Phosphoheptose isomerase OS=Salmonella typhimurium GN=gmhA PE=3 SV=1 GMHA_SALTI - Phosphoheptose isomerase OS=Salmonella typhi GN=gmhA PE=3 SV=1 gi\|29138554, gi\|... - gi\|29142922\|ref\|NP_806264.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar T... gi\|16759305 - gi\|16759305\|ref\|NP_454922.1\| phosphoheptose isomerase [Salmonella enterica subsp. enterica serovar T... lcl\|NC_016856.1_... - [gene=gmhA] [protein=phosphoheptose isomerase] [protein_id=YP_005235985.1] [location=355966..356544] GMHA_SALTI - Phosphoheptose isomerase OS=Salmonella typhi GN=gmhA PE=3 SV=1 GMHA_SALTY - Phosphoheptose isomerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gmhA PE=...	180.0	[0..1]	[192..1]
GMHA_ACTP2 - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=gmhA PE=3 SV... GMHA_ACTP7 - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=gmhA PE=3 SV... gi\|32034150 - gi\|32034150\|ref\|ZP_00134382.1\| COG0279: Phosphoheptose isomerase [Actinobacillus pleuropneumoniae se... GMHA_ACTPJ - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=gmhA PE=3 SV...	180.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQDLIRNEL NEAAETLANF LKDDANIHAI QRAAVLLADS FKAGGKVLSC GNGGSHCDAM  60
   61 HFAEELTGRY RENRPGYPAI AISDVSHISC VGNDFGFNDI FSRYVEAVGR EGDVLLGIST 120
  121 SGNSANVIKA IAAAREKGMK VITLTGKDGG KMAGTADIEI RVPHFGYADR IQEIHIKVIH 180
  181 ILIQLIEKEM VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	2i22A
Description:	No description for 2i22A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits