YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149292296, gi...
Organism:	Yersinia pestis CA88-4125
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149292296, gi....

Description	E-value	Query Range	Subject Range
gi\|73541088, gi\|... - gi\|73541088\|ref\|YP_295608.1\| putative intracellular septation protein [Ralstonia eutropha JMP134], g...	2.0E-59	[1..176]	[25..200]
gi\|37679397, gi\|... - gi\|37679397\|ref\|NP_934006.1\| putative intracellular septation protein [Vibrio vulnificus YJ016], gi\|...	2.0E-59	[1..178]	[20..196]
gi\|86147772, gi\|... - gi\|86147772\|ref\|ZP_01066079.1\| putative intracellular septation protein [Vibrio sp. MED222], gi\|8583...	7.0E-59	[1..177]	[1..176]
YCIB_CUPNH - Probable intracellular septation protein A OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428...	3.0E-57	[1..178]	[1..178]
gi\|83749029, gi\|... - gi\|83749029\|ref\|ZP_00946036.1\| Intracellular septation protein [Ralstonia solanacearum UW551], gi\|83... gi\|207743081, gi... - gi\|207743081\|ref\|YP_002259473.1\| intracellular septation protein [Ralstonia solanacearum IPO1609], g... gi\|206588762, gi... - gi\|207723561\|ref\|YP_002253960.1\| intracellular septation protein [Ralstonia solanacearum MolK2], gi\|...	7.0E-57	[1..178]	[1..178]
YCIB_RALSO - Probable intracellular septation protein A OS=Ralstonia solanacearum (strain GMI1000) GN=RSc1746 PE=... ISPZ_RALSO - Probable intracellular septation protein OS=Ralstonia solanacearum GN=ispZ PE=3 SV=1	2.0E-56	[1..178]	[1..178]
YCIB_VIBVY - Probable intracellular septation protein A OS=Vibrio vulnificus (strain YJ016) GN=VV1213 PE=3 SV=2 ISPZ_VIBVU, YCIB... - Probable intracellular septation protein A OS=Vibrio vulnificus GN=VV1_3073 PE=3 SV=1, Probable intr... YCIB_VIBVU - Probable intracellular septation protein A OS=Vibrio vulnificus (strain CMCP6) GN=VV1_3073 PE=3 SV=1	2.0E-56	[1..178]	[1..177]
YCIB_ECO57 - Probable intracellular septation protein A OS=Escherichia coli O157:H7 GN=yciB PE=3 SV=1 gi\|15801480, gi\|... - gi\|15801480\|ref\|NP_287497.1\| intracellular septation protein A [Escherichia coli O157:H7 EDL933], gi... YCIB_ECOLC - Probable intracellular septation protein A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks... EG11122 - IspA family inner membrane protein / IspA family inner membrane protein; involved in intracellular s... ISPZ_ECOLI - Probable intracellular septation protein - Escherichia coli gi\|195939141 - gi\|195939141\|ref\|ZP_03084523.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4... gi\|208732271, gi... - gi\|208815623\|ref\|ZP_03256802.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4... gi\|208822444, gi... - gi\|208822444\|ref\|ZP_03262763.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4... YCIB_ECO5E - Probable intracellular septation protein A OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yci... YCIB_ECOSE - Probable intracellular septation protein A OS=Escherichia coli (strain SE11) GN=yciB PE=3 SV=1 gi\|217318890, gi... - gi\|217328463\|ref\|ZP_03444545.1\| intracellular septation protein A [Escherichia coli O157:H7 str. TW1... YCIB_ECO8A - Probable intracellular septation protein A OS=Escherichia coli O8 (strain IAI1) GN=yciB PE=3 SV=1 YCIB_ECO55 - Probable intracellular septation protein A OS=Escherichia coli (strain 55989 / EAEC) GN=yciB PE=3 SV... YCIB_SHISS - Probable intracellular septation protein A OS=Shigella sonnei (strain Ss046) GN=yciB PE=3 SV=1 gi\|189354969, gi... - gi\|189354969\|gb\|EDU73388.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4401]... gi\|168771722, gi... - gi\|189359579\|gb\|EDU77998.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4486]... gi\|168778328, gi... - gi\|187766759\|gb\|EDU30603.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4196]... gi\|168784165, gi... - gi\|188998629\|gb\|EDU67615.1\| intracellular septation protein A [Escherichia coli O157:H7 str. EC4076]... YCIB_ECODH - Probable intracellular septation protein A OS=Escherichia coli (strain K12 / DH10B) GN=yciB PE=3 SV=... YCIB_ECO24 - Probable intracellular septation protein A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=y... YCIB_ECOHS - Probable intracellular septation protein A OS=Escherichia coli O9:H4 (strain HS) GN=yciB PE=3 SV=1 gi\|83587392, gi\|... - gi\|83587392\|ref\|ZP_00926020.1\| COG2917: Intracellular septation protein A [Escherichia coli 101-1], ... YCIB_SHIB3 - Probable intracellular septation protein A OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS51... gi\|75257207, gi\|... - gi\|75257207\|ref\|ZP_00728743.1\| COG2917: Intracellular septation protein A [Escherichia coli E22], gi... gi\|75515133, gi\|... - gi\|75515133\|ref\|ZP_00737337.1\| COG2917: Intracellular septation protein A [Escherichia coli 53638], ... gi\|194416084, gi... - gi\|75212693\|ref\|ZP_00712691.1\| COG2917: Intracellular septation protein A [Escherichia coli B171], g... gi\|124500597, gi... - gi\|124528365\|ref\|ZP_01699675.1\| intracellular septation protein A [Escherichia coli B], gi\|124500597... gi\|192956692, gi... - gi\|75235238\|ref\|ZP_00719475.1\| COG2917: Intracellular septation protein A [Escherichia coli E110019]... YCIB_ECOLU - Probable intracellular septation protein A OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) G... gi\|195182843 - gi\|195182843\|dbj\|BAG66415.1\| predicted inner membrane protein [Escherichia coli O111:H-] gi\|254592124, gi... - gi\|254792724\|ref\|YP_003077561.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|253973234, gi... - gi\|254161333\|ref\|YP_003044441.1\| intracellular septation protein A [Escherichia coli B str. REL606],... gi\|253324792, gi... - gi\|254288141\|ref\|YP_003053889.1\| intracellular septation protein A [Escherichia coli BL21(DE3)], gi\|... gi\|242377031, gi... - gi\|251784758\|ref\|YP_002999062.1\| hypothetical protein B21_01238 [Escherichia coli BL21], gi\|24237703... YCIB_ECOBW - Probable intracellular septation protein A OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yci... gi\|89108100, gi\|... - gi\|89108100\|ref\|AP_001880.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... EG11122 - IspA family inner membrane protein / IspA family inner membrane protein; involved in intracellular s... gi\|15831008, gi\|... - gi\|15831008\|ref\|NP_309781.1\| intracellular septation protein A [Escherichia coli O157:H7 str. Sakai]...	4.0E-56	[1..178]	[1..178]
YCIB_SHIDS - Probable intracellular septation protein A OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yciB...	8.0E-56	[1..178]	[1..178]
gi\|902462 - gi\|902462\|gb\|AAB60139.1\| yciB gene product	8.0E-56	[1..178]	[1..178]

Back

Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLLDFLPL VVFFIFYKMY DIFVASGALI VATLVALAFT WLKYRKVEKM TLVTAAMVLV  60
   61 FGTLTLAFHS DLFIKWKVTV LYVLFALALL VSQWVMKKPL IQRMLGKELT LPDKVWSTLN 120
  121 LSWAIFFLVC GLLNIYVAFW LPQDIWVNFK VFGLTALTLI FTLISGVYIY RHMPEEQKKS 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	109.552842
Match:	PF04279.6
Description:	No description for PF04279.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits