YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149751352
Organism:	Equus caballus
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149751352.

Description	E-value	Query Range	Subject Range
gi\|109505505 - gi\|109505505\|ref\|XP_001054024.1\| PREDICTED: similar to CDC28 protein kinase regulatory subunit 2 [Ra...	5.0E-36	[1..79]	[99..177]
gi\|30585357, gi\|... - gi\|60653171\|gb\|AAX29280.1\| CDC28 protein kinase regulatory subunit 1B [synthetic construct], gi\|6065...	5.0E-33	[1..79]	[1..79]
CKS1_CAEBR - Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1 gi\|157772581 - gi\|157772581\|ref\|XP_001664355.1\| hypothetical protein CBG15632 [Caenorhabditis briggsae AF16]	5.0E-33	[3..78]	[5..80]
cks-1 - cyclin-dependent kinase regulatory subunit status:Confirmed UniProt:Q17868 protein_id:AAF99866.1	8.0E-33	[3..78]	[5..80]
gi\|12835151 - gi\|12835151\|dbj\|BAB23169.1\| unnamed protein product [Mus musculus] IPI:IPI00477748.... - Tax_Id=9606 10 kDa protein, Tax_Id=9606 CDC28 protein kinase regulatory subunit 1B (CKS1B) pseudogen...	1.0E-32	[1..79]	[1..79]
gi\|109009542 - gi\|109009542\|ref\|XP_001109081.1\| PREDICTED: similar to Cyclin-dependent kinases regulatory subunit 1...	3.0E-32	[1..79]	[1..79]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHKQIYYSD KYDDEEFEYR HVMLPKDIAK LVPKTHLMSE SEWRNLGVQQ SQGWVHYMIH  60
   61 EPEPHILLFR RPLPKKPKK

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Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1buhB
Description:	CksHs1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	1.72385894854644	bayes_pls_golite062009
binding	1.27976774437131	bayes_pls_golite062009
cyclin-dependent protein kinase regulator activity	0.778971115132656	bayes_pls_golite062009
kinase regulator activity	0.498328649950238	bayes_pls_golite062009
protein kinase regulator activity	0.47491756269249	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: