YRC Public Data Repository - Protein Structure Prediction

Protein:	GLVG_ECOLI
Organism:	Escherichia coli
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLVG_ECOLI.

Description	E-value	Query Range	Subject Range
MALH_CLOAB - Maltose-6'-phosphate glucosidase MalH OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM... MALH_CLOAB - Maltose-6'-phosphate glucosidase malH OS=Clostridium acetobutylicum GN=malH PE=1 SV=1	183.0	[0..1]	[212..1]
gi\|49611303, gi\|... - gi\|50120777\|ref\|YP_049944.1\| 6-phospho-alpha-glucosidase [Pectobacterium atrosepticum SCRI1043], gi\|...	182.0	[0..1]	[212..1]
gi\|255651521 - gi\|255651521\|ref\|ZP_05398423.1\| putative maltose-6'-phosphate glucosidase [Clostridium difficile QCD... gi\|254976606 - gi\|254976606\|ref\|ZP_05273078.1\| putative maltose-6'-phosphate glucosidase [Clostridium difficile QCD... gi\|255315742 - gi\|255315742\|ref\|ZP_05357325.1\| putative maltose-6'-phosphate glucosidase [Clostridium difficile QCD... gi\|255518403 - gi\|255518403\|ref\|ZP_05386079.1\| putative maltose-6'-phosphate glucosidase [Clostridium difficile QCD... gi\|119634167, gi... - gi\|90573305\|ref\|ZP_01229821.1\| hypothetical protein CdifQ_02003330 [Clostridium difficile QCD-32g58]...	182.0	[0..2]	[212..14]
gi\|126700677, gi... - gi\|126700677\|ref\|YP_001089574.1\| putative maltose-6'-phosphate glucosidase [Clostridium difficile 63...	182.0	[0..2]	[212..4]
gi\|52002498, gi\|... - gi\|52784653\|ref\|YP_090482.1\| MalA [Bacillus licheniformis ATCC 14580], gi\|52347155\|gb\|AAU39789.1\| Ma...	181.0	[0..2]	[212..3]
gi\|56911587, gi\|... - gi\|56965343\|ref\|YP_177075.1\| maltose-6'-phosphate glucosidase [Bacillus clausii KSM-K16], gi\|5691158...	180.0	[0..1]	[212..1]
gi\|18309181, gi\|... - gi\|18309181\|ref\|NP_561115.1\| maltose-6'-phosphate glucosidase [Clostridium perfringens str. 13], gi\|...	177.0	[0..1]	[212..1]
gi\|221322177 - gi\|221322177\|ref\|ZP_03603471.1\| 6-phospho-alpha-glucosidase [Bacillus subtilis subsp. subtilis str. ... gi\|221317904 - gi\|221317904\|ref\|ZP_03599198.1\| 6-phospho-alpha-glucosidase [Bacillus subtilis subsp. subtilis str. ... GLVA_BACSU - Maltose-6'-phosphate glucosidase OS=Bacillus subtilis GN=glvA PE=1 SV=1 gi\|221312978 - gi\|221312978\|ref\|ZP_03594783.1\| 6-phospho-alpha-glucosidase [Bacillus subtilis subsp. subtilis str. ... GLVA_BACSU - Maltose-6'-phosphate glucosidase OS=Bacillus subtilis (strain 168) GN=glvA PE=1 SV=1	176.0	[0..1]	[212..1]
gi\|22776491, gi\|... - gi\|23098266\|ref\|NP_691732.1\| 6-phospho-beta-glucosidase [Oceanobacillus iheyensis HTE831], gi\|227764...	176.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKFSVVVAG GGSTFTPGIV LMLLANQDRF PLRALKFYDN DGARQEVIAE ACKVILKEKA  60
   61 PDIAFSYTTD PEVAFSDVDF VMAHIRVGKY PMRELDEKIP LRHGVVGQET CGPGGIAYGM 120
  121 RSIGGVLELV DYMEKYSPNA WMLNYSNPAA IVAEATRRLR PNAKILNICD MPIGIESRMA 180
  181 QIVGLQDRKQ MRVRYYGLNH WWSAISRSFR KG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1u8xX
Description:	CRYSTAL STRUCTURE OF GLVA FROM BACILLUS SUBTILIS, A METAL-REQUIRING, NAD-DEPENDENT 6-PHOSPHO-ALPHA-GLUCOSIDASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.26736023026862	bayes_pls_golite062009
oxidoreductase activity	0.68812524232244	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: