YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTS_ECOLI
Organism:	Escherichia coli
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37200223, gi\|... - gi\|37675684\|ref\|NP_936080.1\| sodium/glutamate symporter [Vibrio vulnificus YJ016], gi\|37200223\|dbj\|B... gi\|27367577, gi\|... - gi\|27367577\|ref\|NP_763104.1\| Na+/glutamate symporter [Vibrio vulnificus CMCP6], gi\|27359149\|gb\|AAO08...	440.0	[0..1]	[396..4]
gi\|149748388, gi... - gi\|153838256\|ref\|ZP_01990923.1\| sodium/glutamate symporter [Vibrio parahaemolyticus AQ3810], gi\|1497... gi\|28808173, gi\|... - gi\|28899890\|ref\|NP_799545.1\| sodium/glutamate symporter [Vibrio parahaemolyticus RIMD 2210633], gi\|2... gi\|28808173 - gi\|28808173\|dbj\|BAC61378.1\| sodium/glutamate symporter [Vibrio parahaemolyticus RIMD 2210633]	438.0	[0..1]	[396..4]
gi\|151940086, gi... - gi\|75855560\|ref\|ZP_00763207.1\| COG0786: Na+/glutamate symporter [Vibrio sp. Ex25], gi\|254227474\|ref\|...	438.0	[0..1]	[396..4]
gi\|91222967, gi\|... - gi\|91222967\|ref\|ZP_01258233.1\| sodium/glutamate symporter [Vibrio alginolyticus 12G01], gi\|91191780\|...	436.0	[0..1]	[396..4]
gi\|37200225, gi\|... - gi\|37675686\|ref\|NP_936082.1\| sodium/glutamate symporter [Vibrio vulnificus YJ016], gi\|37200225\|dbj\|B...	428.0	[0..1]	[396..4]
gi\|254673883 - gi\|254673883\|emb\|CBA09666.1\| sodium/glutamate symport carrier protein [Neisseria meningitidis serogr... gi\|11277251 - pir\|\|F81240 sodium/glutamate symporter NMB0085 [imported] - Neisseria meningitidis (strain MC58 sero... gi\|15676017, gi\|... - gi\|7225302\|gb\|AAF40548.1\| sodium/glutamate symporter [Neisseria meningitidis MC58], gi\|15676017\|ref\|...	427.0	[0..2]	[396..3]
gi\|161594656, gi... - gi\|161869103\|ref\|YP_001598269.1\| sodium/glutamate symport carrier protein [Neisseria meningitidis 05... gi\|254671518 - gi\|254671518\|emb\|CBA09114.1\| sodium/glutamate symport carrier protein [Neisseria meningitidis alpha1... gi\|11277250 - pir\|\|E82012 sodium/glutamate symport carrier protein NMA0183 [imported] - Neisseria meningitidis (st... gi\|218767217, gi... - gi\|7378955\|emb\|CAB83498.1\| sodium/glutamate symport carrier protein [Neisseria meningitidis Z2491], ...	427.0	[0..2]	[396..3]
gi\|33152725, gi\|... - gi\|33152725\|ref\|NP_874078.1\| sodium/glutamate symporter [Haemophilus ducreyi 35000HP], gi\|33148949\|g...	425.0	[0..2]	[396..4]
gi\|165976395, gi... - gi\|165976395\|ref\|YP_001651988.1\| sodium/glutamate symporter [Actinobacillus pleuropneumoniae serovar... gi\|46143519 - gi\|46143519\|ref\|ZP_00135045.2\| COG0786: Na+/glutamate symporter [Actinobacillus pleuropneumoniae ser... gi\|190150291, gi... - gi\|190150291\|ref\|YP_001968816.1\| sodium/glutamate symport carrier protein [Actinobacillus pleuropneu...	425.0	[0..2]	[396..4]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHLDTLATL VAATLTLLLG RKLVHSVSFL KKYTIPEPVA GGLLVALALL VLKKSMGWEV  60
   61 NFDMSLRDPL MLAFFATIGL N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANIASLRAGG RVVGIFLIVV VGLLVMQNAI GIGMASLLGL DPLMGLLAGS ITLSGGHGTG  60
   61 AAWSKLFIER YGFTNATEVA MACATFGLVL GGLIGGPVAR YLVKHSTTPN GIPDDQEVPT 120
  121 AFEKPDVGRM ITSLVLIETI ALIAICLTVG KIVAQLLAGT AFELPTFVCV LFVGVILSNG 180
  181 LSIMGFYRVF ERAVSVLGNV SL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLFLAMALMG LKLWELASLA LPMLAILVVQ TIFMALYAIF VTWRMMGKNY DAAVLAAGHC  60
   61 GFGLGATPTA IANMQAITER FGPSHMAFLV VPMVGAFFID IVNALVIKLY LMLPIFAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits