YRC Public Data Repository - Protein Structure Prediction

Protein:	GLRX1_ECOLI, GLR...
Organism:	Escherichia coli
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLRX1_ECOLI, GLR....

Description	E-value	Query Range	Subject Range
gi\|83372730, gi\|... - gi\|83372730\|ref\|ZP_00917510.1\| Glutaredoxin, GrxC [Rhodobacter sphaeroides ATCC 17029], gi\|83367052\|...	105.0	[0..1]	[84..240]
gi\|77464773, gi\|... - gi\|77464773\|ref\|YP_354277.1\| glutaredoxin [Rhodobacter sphaeroides 2.4.1], gi\|77389191\|gb\|ABA80376.1... gi\|126105279, gi... - gi\|126463615\|ref\|YP_001044729.1\| glutaredoxin 3 [Rhodobacter sphaeroides ATCC 17029], gi\|126105279\|g... gi\|221161471, gi... - gi\|221640690\|ref\|YP_002526952.1\| Glutaredoxin 3 [Rhodobacter sphaeroides KD131], gi\|221161471\|gb\|ACM...	104.0	[0..1]	[84..1]
gi\|238794392, gi... - gi\|77977371\|ref\|ZP_00832821.1\| COG0695: Glutaredoxin and related proteins [Yersinia intermedia ATCC ...	104.0	[0..2]	[84..3]
gi\|238717336, gi... - gi\|77961960\|ref\|ZP_00825787.1\| COG0695: Glutaredoxin and related proteins [Yersinia mollaretii ATCC ...	104.0	[0..2]	[80..3]
gi\|119385313, gi... - gi\|69937357\|ref\|ZP_00632023.1\| Glutaredoxin [Paracoccus denitrificans PD1222], gi\|69151320\|gb\|EAN645...	103.0	[0..2]	[84..4]
gi\|85826124, gi\|... - gi\|86136800\|ref\|ZP_01055378.1\| glutaredoxin [Roseobacter sp. MED193], gi\|85826124\|gb\|EAQ46321.1\| glu...	103.0	[0..1]	[85..14]
gi\|77972953, gi\|... - gi\|77972953\|ref\|ZP_00828507.1\| COG0695: Glutaredoxin and related proteins [Yersinia frederiksenii AT...	103.0	[0..2]	[80..3]
gi\|83838639, gi\|... - gi\|83950740\|ref\|ZP_00959473.1\| glutaredoxin [Roseovarius nubinhibens ISM], gi\|83838639\|gb\|EAP77935.1...	102.0	[0..1]	[85..1]
gi\|86556169, gi\|... - gi\|86607627\|ref\|YP_476389.1\| glutaredoxin 3 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|86556169\|gb\|ABD0... gi\|86556169, gi\|... - gi\|86607627\|ref\|YP_476389.1\| glutaredoxin 3 [Cyanobacteria bacterium Yellowstone B-Prime], gi\|865561...	102.0	[0..1]	[84..1]
gi\|86605249 - gi\|86605249\|ref\|YP_474012.1\| glutaredoxin 3 [Cyanobacteria bacterium Yellowstone A-Prime] gi\|86605249, gi\|... - gi\|86605249\|ref\|YP_474012.1\| glutaredoxin 3 [Synechococcus sp. JA-3-3Ab], gi\|86553791\|gb\|ABC98749.1\|...	102.0	[0..1]	[84..1]

Back

Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTVIFGRSG CPYCVRAKDL AEKLSNERDD FQYQYVDIRA EGITKEDLQQ KAGKPVETVP  60
   61 QIFVDQQHIG GYTDFAAWVK ENLDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1egoA
Description:	NMR STRUCTURE OF OXIDIZED ESCHERICHIA COLI GLUTAREDOXIN: COMPARISON WITH REDUCED E. COLI GLUTAREDOXIN AND FUNCTIONALLY RELATED PROTEINS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: