YRC Public Data Repository - Protein Structure Prediction

Protein:	GLCE_ECOLI
Organism:	Escherichia coli
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLCE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|52078783, gi\|... - gi\|52784153\|ref\|YP_089982.1\| YsfC [Bacillus licheniformis ATCC 14580], gi\|52346655\|gb\|AAU39289.1\| Ys...	332.0	[0..2]	[348..44]
gi\|89151095, gi\|... - gi\|89200934\|ref\|ZP_01179683.1\| Glycolate oxidase subunit GlcD [Bacillus cereus subsp. cytotoxis NVH ...	327.0	[0..2]	[348..44]
gi\|115423230, gi... - gi\|187478644\|ref\|YP_786668.1\| glycolate oxidase subunit [Bordetella avium 197N], gi\|115423230\|emb\|CA...	327.0	[0..2]	[349..55]
gi\|33600922, gi\|... - gi\|33600922\|ref\|NP_888482.1\| putative oxidoreductase [Bordetella bronchiseptica RB50], gi\|33568522\|e...	325.0	[0..2]	[349..55]
gi\|33566529 - gi\|33566529\|emb\|CAE37785.1\| putative oxidoreductase [Bordetella parapertussis] gi\|33597078 - gi\|33597078\|ref\|NP_884721.1\| putative oxidoreductase [Bordetella parapertussis 12822]	325.0	[0..2]	[349..55]
gi\|221315135 - gi\|221315135\|ref\|ZP_03596940.1\| hypothetical protein BsubsN3_15562 [Bacillus subtilis subsp. subtili... GLCD_BACSU - Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 gi\|221324335 - gi\|221324335\|ref\|ZP_03605629.1\| hypothetical protein BsubsS_15627 [Bacillus subtilis subsp. subtilis... GLCD_BACSU - Glycolate oxidase subunit glcD OS=Bacillus subtilis GN=glcD PE=3 SV=1 gi\|221320053 - gi\|221320053\|ref\|ZP_03601347.1\| hypothetical protein BsubsJ_15468 [Bacillus subtilis subsp. subtilis...	324.0	[0..2]	[348..44]
gi\|33563917, gi\|... - gi\|33593844\|ref\|NP_881488.1\| putative oxidoreductase [Bordetella pertussis Tohama I], gi\|33563917\|em...	323.0	[0..2]	[349..55]
gi\|51977507, gi\|... - gi\|52144038\|ref\|YP_082789.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus cereus E33L], gi\|519775...	323.0	[0..2]	[348..44]
gi\|25323065 - pir\|\|B83991 glycolate oxidase subunit BH2730 [imported] - Bacillus halodurans (strain C-125) gi\|10175351, gi\|... - gi\|15615293\|ref\|NP_243596.1\| glycolate oxidase subunit [Bacillus halodurans C-125], gi\|10175351\|dbj\|...	323.0	[0..2]	[348..44]
gi\|91685822, gi\|... - gi\|91781868\|ref\|YP_557074.1\| putative FAD-binding oxidase [Burkholderia xenovorans LB400], gi\|916858...	323.0	[0..2]	[349..55]

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Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRECDYSQA LLEQVNQAIS DKTPLVIQGS NSKAFLGRPV TGQTLDVRCH RGIVNYDPTE  60
   61 LVITARVGTP LVTIEAALES AGQMLPCEPP HYGEEATWGG MVACGLAGPR RPWSGSVRDF 120
  121 VLGTRIITGA GKHLRFGGEV MKNVAGYDLS RLMVGSYGCL GVLTEISMKV LPRPRASLSL 180
  181 RREISLQEAM SEIAEWQLQP LPISGLCYFD NALWIRLEGG EGSVKAAREL LGGEEVAGQF 240
  241 WQQLREQQLP FFSLPGTLWR ISLPSDAPMM DLPGEQLIDW GGALRWLKST AEDNQIHRIA 300
  301 RNAGGHATRF SAGDGGFAPL SAPLFRYHQQ LKQQLDPCGV FNPGRMYAEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1wveA
Description:	p-Cresol Methylhydroxylase: Alteration of the Structure of the Flavoprotein Subunit upon its Binding to the Cytochrome Subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glycolate oxidase activity	8.5333949974377	bayes_pls_golite062009
oxidoreductase activity	0.855636903130687	bayes_pls_golite062009
catalytic activity	0.840929189052895	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.016501492839311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: