YRC Public Data Repository - Protein Structure Prediction

Protein:	GLCD_ECOLI
Organism:	Escherichia coli
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLCD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67158714, gi\|... - gi\|67158714\|ref\|ZP_00419575.1\| Glycolate oxidase subunit GlcD [Azotobacter vinelandii AvOP], ref\|ZP_... gi\|67158714, gi\|... - gi\|67158714\|ref\|ZP_00419575.1\| Glycolate oxidase subunit GlcD [Azotobacter vinelandii AvOP], gi\|6708...	502.0	[0..1]	[499..1]
gi\|24985422, gi\|... - gi\|26990451\|ref\|NP_745876.1\| glycolate oxidase subunit GlcD [Pseudomonas putida KT2440], gi\|24985422...	496.0	[0..1]	[499..1]
gi\|148511298, gi... - gi\|82735447\|ref\|ZP_00898309.1\| Glycolate oxidase subunit GlcD [Pseudomonas putida F1], gi\|82717080\|g...	496.0	[0..1]	[499..1]
gi\|71738130, gi\|... - gi\|71738130\|ref\|YP_275412.1\| glycolate oxidase subunit GlcD [Pseudomonas syringae pv. phaseolicola 1...	495.0	[0..1]	[499..1]
tr\|Q87Z75\|Q87Z75... - Glycolate oxidase, subunit GlcD OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=glcD PE=4 SV=1 gi\|28853964, gi\|... - gi\|28870716\|ref\|NP_793335.1\| glycolate oxidase subunit GlcD [Pseudomonas syringae pv. tomato str. DC...	495.0	[0..1]	[499..1]
glcD - glcD glycolate oxidase subunit GlcD 1233699:1235192 forward MW:53314 gi\|167368285, gi... - gi\|192289731\|ref\|YP_001990336.1\| FAD linked oxidase domain protein [Rhodopseudomonas palustris TIE-1...	494.0	[0..1]	[499..1]
gi\|115588723, gi... - gi\|53726775\|ref\|ZP_00347687.1\| COG0277: FAD/FMN-containing dehydrogenases [Pseudomonas aeruginosa UC...	492.0	[0..1]	[499..1]
gi\|48731625, gi\|... - gi\|77458446\|ref\|YP_347951.1\| glycolate oxidase subunit GlcD [Pseudomonas fluorescens Pf0-1], gi\|7738...	491.0	[0..1]	[499..1]
gi\|75515230 - gi\|75515230\|ref\|ZP_00737414.1\| COG0277: FAD/FMN-containing dehydrogenases [Escherichia coli 53638]	491.0	[0..1]	[499..1]
gi\|11348640 - pir\|\|E82977 glycolate oxidase subunit GlcD PA5355 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9951675, gi\|1... - gi\|9951675\|gb\|AAG08740.1\|AE004947_10 glycolate oxidase subunit GlcD [Pseudomonas aeruginosa PAO1], g... gi\|126169885, gi... - gi\|84318008\|ref\|ZP_00966441.1\| COG0277: FAD/FMN-containing dehydrogenases [Pseudomonas aeruginosa C3...	491.0	[0..1]	[499..1]

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Predicted Domain #1

Region A:
Residues: [1-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILYEERLD GALPDVDRTS VLMALREHVP GLEILHTDEE IIPYECDGLS AYRTRPLLVV  60
   61 LPKQMEQVTA ILAVCHRLRV PVVTRGAGTG LSGGALPLEK GVLLVMARFK EILDINPVGR 120
  121 RARVQPGVRN LAISQAVAPH NLYYAPDPSS QIACSIGGNV AENAGGVHCL KYGLTVHNLL 180
  181 KIEVQTLDGE ALTLGSDALD SPGFDLLALF TGSEGMLGVT TEVTVKLLPK PPVARVLLAS 240
  241 FDSVEKAGLA VGDIIANGII PGGLEMMDNL SIRAAEDFIH AGYPVDAEAI LLCELDGVES 300
  301 DVQEDCERVN DILLKAGATD VRLAQDEAER VRFWAGRKNA FPAVGRISPD YYCMDGTIPR 360
  361 RALPGVLEGI ARLSQQYDLR VANVFHAGDG NMHPLILFDA NEPGEFARAE ELGGKILELC 420
  421 VEVGGSISGE HGIGREKINQ MCAQFNSDEI TTFHAVKAAF DPDGLLNPGK NIPTLHRCAE 480
  481 FGAMHVHHGH LPFPELERF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.221849
Match:	2uuuA
Description:	No description for 2uuuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits