YRC Public Data Repository - Protein Structure Prediction

Protein:	GLCA_ECOLI
Organism:	Escherichia coli
Length:	560 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLCA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82948068, gi\|... - gi\|83313227\|ref\|YP_423491.1\| L-lactate permease [Magnetospirillum magneticum AMB-1], gi\|82948068\|dbj...	585.0	[0..1]	[559..205]
gi\|82737639, gi\|... - gi\|82737639\|ref\|ZP_00900486.1\| L-lactate permease [Pseudomonas putida F1], gi\|82715292\|gb\|EAP50359.1... gi\|24986489, gi\|... - gi\|26991418\|ref\|NP_746843.1\| L-lactate transport [Pseudomonas putida KT2440], gi\|24986489\|gb\|AAN7030...	584.0	[0..1]	[559..1]
gi\|194459241, gi... - gi\|194472877\|ref\|ZP_03078861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kent... gi\|197291254, gi... - gi\|197291254\|gb\|EDY30606.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Schwarze... gi\|62182186, gi\|... - gi\|62182186\|ref\|YP_218603.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Cholera... gi\|205333228, gi... - gi\|205333228\|gb\|EDZ19992.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kentucky... gi\|224585493, gi... - gi\|224585493\|ref\|YP_002639292.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Par... gi\|204321998, gi... - gi\|204928565\|ref\|ZP_03219764.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Javi... gi\|194737852, gi... - gi\|194737852\|ref\|YP_002116629.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sch...	582.0	[0..1]	[559..1]
gi\|214001126 - gi\|214001126\|ref\|ZP_03411861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 gi\|213647892 - gi\|213647892\|ref\|ZP_03377945.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|213427162 - gi\|213427162\|ref\|ZP_03359912.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|29139743, gi\|... - gi\|29144106\|ref\|NP_807448.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16762617 - gi\|16762617\|ref\|NP_458234.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s...	582.0	[0..1]	[559..1]
gi\|198242134, gi... - gi\|198242134\|ref\|YP_002217654.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Dub... lcl\|NC_016856.1_... - [gene=lldP] [protein=L-lactate permease] [protein_id=YP_005239931.1] [location=3899604..3901259] gi\|197264645, gi... - gi\|197264645\|ref\|ZP_03164719.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sain... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1 gi\|195632495, gi... - gi\|195632495\|gb\|EDX50979.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Newport ... gi\|205327790, gi... - gi\|205327790\|gb\|EDZ14554.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar 4,[5],12... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lldP PE=3 SV=1 gi\|206710732, gi... - gi\|207858929\|ref\|YP_002245580.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Ent... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1	581.0	[0..1]	[559..1]
gi\|95108990 - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48] gi\|104780003, gi... - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48], gi\|104780003\|ref\|YP_60...	580.0	[0..1]	[559..1]
gi\|56129839, gi\|... - gi\|56415582\|ref\|YP_152657.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Paratyp...	580.0	[0..1]	[559..1]
gi\|152977432, gi... - gi\|89201151\|ref\|ZP_01179897.1\| L-lactate permease [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	578.0	[0..1]	[559..1]
gi\|30023260, gi\|... - gi\|30023260\|ref\|NP_834891.1\| L-lactate permease [Bacillus cereus ATCC 14579], gi\|29898820\|gb\|AAP1209... gi\|228652813, gi... - gi\|229130474\|ref\|ZP_04259430.1\| Glycolate permease glcA [Bacillus cereus BDRD-Cer4], gi\|228652813\|gb...	574.0	[0..1]	[559..1]
gi\|163865106, gi... - gi\|89205090\|ref\|ZP_01183663.1\| L-lactate permease [Bacillus weihenstephanensis KBAB4], gi\|89157104\|g... gi\|229169936, gi... - gi\|229169936\|ref\|ZP_04297631.1\| Glycolate permease glcA [Bacillus cereus AH621], gi\|228613541\|gb\|EEK...	572.0	[0..1]	[559..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTWTQMYMP MGGLGLSALV ALIPIIFFFV ALAVLRLKGH VAGAITLILS ILIAIFAFKM  60
   61 PIDMAFAAAG YGFIYGLWPI AWIIVAAVFL YKLTVASGQF DIIRSSVISI TDDQRLQVLL 120
  121 IGFSFGALLE GAAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGAPVAITGA LLVGLGFKPL YAAGLCLIAN TAPVAFGALG VPILVAGQVT GIDPFHIGAM  60
   61 AGRQLPFLSV LVPFWLVAMM DGWKGVKETW PAALVAGGSF AVTQFFTSNY IGPELPDITS 120
  121 ALVSIVSLAL FLKVWRPKNT ETAISMGQSA GAMVVNKPSS GGPVPSEYSL GQIIRAWSPF 180
  181 LILTVLVTIW TMKPFKALFA PGGAFYSLVI NFQIPHLHQQ VLKAAPIVAQ PTPMDAVFKF 240
  241 DPLSAGGTAI FIAAIISIFI LGVGIKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [402-560]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIGVFAETLI SLKWPILSIG MVLAFAFVTN YSGMSTTLAL VLAGTGVMFP FFSPFLGWLG  60
   61 VFLTGSDTSS NALFGSLQST TAQQINVSDT LLVAANTSGG VTGKMISPQS IAVACAATGM 120
  121 VGRESELFRY TVKHSLIFAS VIGIITLLQA YVFTGMLVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits