YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153888000, gi...
Organism:	Ralstonia pickettii 12D
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153888000, gi....

Description	E-value	Query Range	Subject Range
gi\|111613237, gi... - gi\|111613237\|ref\|ZP_01400319.1\| hypothetical protein VeisDRAFT_2633 [Verminephrobacter eiseniae EF01...	110.0	[0..1]	[96..1]
gi\|206592391, gi... - gi\|207742964\|ref\|YP_002259356.1\| isrso8-transposase orfa protein [Ralstonia solanacearum IPO1609], g... gi\|83727088, gi\|... - gi\|83748307\|ref\|ZP_00945332.1\| Transposase [Ralstonia solanacearum UW551], gi\|83746338\|ref\|ZP_009433...	110.0	[0..1]	[97..1]
gi\|91686025, gi\|... - gi\|91783372\|ref\|YP_558578.1\| putative transposase, ISRSO8 orfA like [Burkholderia xenovorans LB400],...	109.0	[0..1]	[98..1]
gi\|63257746, gi\|... - gi\|66047039\|ref\|YP_236880.1\| transposase IS3/IS911 [Pseudomonas syringae pv. syringae B728a], gi\|660...	108.0	[0..1]	[97..1]
gi\|23119971 - ref\|ZP_00102829.1\| COG2963: Transposase and inactivated derivatives [Desulfitobacterium hafniense DC... gi\|93352827, gi\|... - gi\|94312700\|ref\|YP_585909.1\| transposase IS3/IS911 [Ralstonia metallidurans CH34], gi\|94308975\|ref\|Y...	107.0	[0..1]	[98..2]
gi\|67847760, gi\|... - gi\|91788708\|ref\|YP_549660.1\| transposase IS3/IS911 [Polaromonas sp. JS666], gi\|91697933\|gb\|ABE44762....	105.0	[0..1]	[98..1]
gi\|84717804, gi\|... - gi\|84717804\|ref\|ZP_01023614.1\| tISRso8a, RSp0547; ISRSO8-transposase orfA protein [Polaromonas napht...	103.0	[0..1]	[98..1]
gi\|53758545, gi\|... - gi\|53804784\|ref\|YP_113391.1\| ISMca2, transposase, OrfA [Methylococcus capsulatus str. Bath], gi\|5375...	99.0	[0..1]	[98..1]
gi\|110834943, gi... - gi\|110834943\|ref\|YP_693802.1\| transposase, putative [Alcanivorax borkumensis SK2], gi\|110648054\|emb\|...	97.0	[0..8]	[97..4]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKTKRAQY TLEFKLEAVR LVKSGQSMAV VSATLGIRAQ TLHNWVKAER EGKLTGAGMK  60
   61 PVSPEQMELA RLRAEVARLK MERDILKKAA AYFAKESV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2rn7A
Description:	No description for 2rn7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits