YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149740026, gi...
Organism:	Vibrio cholerae MZO-2
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149740026, gi....

Description	E-value	Query Range	Subject Range
gi\|229342657, gi... - gi\|229520291\|ref\|ZP_04409717.1\| hypothetical protein VIF_000811 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229347915, gi... - gi\|229515210\|ref\|ZP_04404670.1\| hypothetical protein VCB_002867 [Vibrio cholerae TMA 21], gi\|2293479... gi\|150424502, gi... - gi\|254285230\|ref\|ZP_04960195.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|121727627, gi... - gi\|75814713\|ref\|ZP_00745269.1\| hypothetical protein VchoV_01002580 [Vibrio cholerae V52], gi\|1217276...	257.0	[0..1]	[150..1]
tr\|D7H9P5\|D7H9P5... - L-alanine exporter AlaE OS=Vibrio cholerae RC385 GN=alaE PE=3 SV=1 gi\|116216860, gi... - gi\|75823655\|ref\|ZP_00753143.1\| hypothetical protein VchoR_01001253 [Vibrio cholerae RC385], gi\|11621...	252.0	[0..1]	[148..1]
gi\|28806057, gi\|... - gi\|28897844\|ref\|NP_797449.1\| hypothetical protein VP1070 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806057 - gi\|28806057\|dbj\|BAC59333.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|149748564, gi... - gi\|153838030\|ref\|ZP_01990697.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	249.0	[0..1]	[145..1]
gi\|75854152, gi\|... - gi\|75854152\|ref\|ZP_00761864.1\| COG0477: Permeases of the major facilitator superfamily [Vibrio sp. E...	246.0	[0..1]	[148..1]
gi\|91227594, gi\|... - gi\|91227594\|ref\|ZP_01261898.1\| hypothetical protein V12G01_20451 [Vibrio alginolyticus 12G01], gi\|91...	242.0	[0..1]	[148..1]
gi\|37680447, gi\|... - gi\|37680447\|ref\|NP_935056.1\| hypothetical protein VV2263 [Vibrio vulnificus YJ016], gi\|37199195\|dbj\|... gi\|27365510, gi\|... - gi\|27365510\|ref\|NP_761038.1\| hypothetical protein VV1_2181 [Vibrio vulnificus CMCP6], gi\|27361658\|gb...	242.0	[0..1]	[145..1]
gi\|86146521, gi\|... - gi\|86146521\|ref\|ZP_01064844.1\| hypothetical protein MED222_12938 [Vibrio sp. MED222], gi\|85835784\|gb... gi\|218322143, gi... - gi\|218709124\|ref\|YP_002416745.1\| hypothetical protein VS_1130 [Vibrio splendidus LGP32], gi\|21832214...	238.0	[0..1]	[145..1]
gi\|84377086, gi\|... - gi\|84388537\|ref\|ZP_00991084.1\| hypothetical protein V12B01_07071 [Vibrio splendidus 12B01], gi\|84377...	238.0	[0..1]	[145..1]
ALAE_PHOPR - L-alanine exporter AlaE OS=Photobacterium profundum (strain SS9) GN=alaE PE=3 SV=1 ALAE_PHOPR - L-alanine exporter AlaE OS=Photobacterium profundum GN=alaE PE=3 SV=1	236.0	[0..1]	[145..1]
gi\|90326860, gi\|... - gi\|90412136\|ref\|ZP_01220142.1\| putative inner membrane protein [Photobacterium profundum 3TCK], gi\|9...	235.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKARGPFCIR HAAADTFAMV VFCFVTGMII EIFVSGMTFQ QSLASRTLSI PVNIAIAWPY  60
   61 GVFRDYVLRQ GRKISPTGWM KNLSDLVAYV LFQSPVYAAI LFTVGASTDQ IITAVATNAL 120
  121 VSCGMGVLYG YFLDMCRRWF KVPGYTVSEG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	119.455932
Match:	PF06610.4
Description:	No description for PF06610.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits