YRC Public Data Repository - Protein Structure Prediction

Protein:	RL33_VIBCB
Organism:	Vibrio harveyi ATCC BAA-1116
Length:	56 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL33_VIBCB.

Description	E-value	Query Range	Subject Range
gi\|86163693, gi\|... - gi\|87120855\|ref\|ZP_01076747.1\| RpmG protein [Marinomonas sp. MED121], gi\|86163693\|gb\|EAQ64966.1\| Rpm...	81.0	[0..1]	[56..1]
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	81.0	[0..1]	[55..28]
gi\|84690282, gi\|... - gi\|84703848\|ref\|ZP_01017676.1\| 50S ribosomal protein L33 [Parvularcula bermudensis HTCC2503], gi\|846...	78.0	[0..1]	[56..30]
RL33_CUPPJ - 50S ribosomal protein L33 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpmG PE=3 SV=... RL33_CUPTR - 50S ribosomal protein L33 OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / L... RL33_CUPTR - 50S ribosomal protein L33 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpmG PE=3 SV=1 RL33_CUPNH - 50S ribosomal protein L33 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) G...	76.0	[0..1]	[56..1]
RL33_MANSM - 50S ribosomal protein L33 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpmG PE=3 SV=1	76.0	[0..1]	[56..1]
RL33_HAEIN - 50S ribosomal protein L33 OS=Haemophilus influenzae GN=rpmG PE=3 SV=1 RL33_HAEIG - 50S ribosomal protein L33 OS=Haemophilus influenzae (strain PittGG) GN=rpmG PE=3 SV=1 gi\|197749355, gi... - gi\|254361400\|ref\|ZP_04977541.1\| ribosomal protein L33 [Mannheimia haemolytica PHL213], gi\|197749355\|... gi\|145640618, gi... - gi\|145640618\|ref\|ZP_01796201.1\| 50S ribosomal protein L33 [Haemophilus influenzae R3021], gi\|1449843... gi\|229811014, gi... - gi\|229846010\|ref\|ZP_04466122.1\| 50S ribosomal protein L33 [Haemophilus influenzae 7P49H1], gi\|229811... gi\|46129102 - gi\|46129102\|ref\|ZP_00201995.1\| COG0267: Ribosomal protein L33 [Haemophilus influenzae R2846] RL33_HAEIE - 50S ribosomal protein L33 OS=Haemophilus influenzae (strain PittEE) GN=rpmG PE=3 SV=1 gi\|229812983, gi... - gi\|229843989\|ref\|ZP_04464130.1\| 50S ribosomal protein L33 [Haemophilus influenzae 6P18H1], gi\|229812... gi\|46133215 - gi\|46133215\|ref\|ZP_00203103.1\| COG0267: Ribosomal protein L33 [Haemophilus influenzae R2866] RL33_HAEI8 - 50S ribosomal protein L33 OS=Haemophilus influenzae (strain 86-028NP) GN=rpmG PE=3 SV=1 RL33_HAEIN - 50S ribosomal protein L33 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... gi\|145637255, gi... - gi\|145637255\|ref\|ZP_01792916.1\| 50S ribosomal protein L33 [Haemophilus influenzae PittHH], gi\|145269... gi\|145272556, gi... - gi\|145638227\|ref\|ZP_01793837.1\| 50S ribosomal protein L33 [Haemophilus influenzae PittII], gi\|145272... gi\|144987243, gi... - gi\|145632336\|ref\|ZP_01788071.1\| 50S ribosomal protein L33 [Haemophilus influenzae 3655], gi\|14498724... gi\|145634126, gi... - gi\|145634126\|ref\|ZP_01789837.1\| 50S ribosomal protein L33 [Haemophilus influenzae PittAA], gi\|145268... gi\|145640618, gi... - gi\|145640618\|ref\|ZP_01796201.1\| 50S ribosomal protein L33 [Haemophilus influenzae R3021], gi\|1456300...	76.0	[0..1]	[56..1]
gi\|32307622 - gi\|32307622\|gb\|AAP79216.1\| ribosomal protein rpL33 [Bigelowiella natans]	76.0	[0..3]	[56..73]
RL33_CUPMC - 50S ribosomal protein L33 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	76.0	[0..1]	[56..1]
RL33_HISS2 - 50S ribosomal protein L33 OS=Histophilus somni (strain 2336) GN=rpmG PE=3 SV=1 RL33_HAES1 - 50S ribosomal protein L33 OS=Haemophilus somnus (strain 129Pt) GN=rpmG PE=3 SV=1	75.0	[0..1]	[56..1]
RL331_SALTO - 50S ribosomal protein L33 1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rp...	75.0	[0..1]	[54..1]

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Predicted Domain #1

Region A:
Residues: [1-56]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGVREKI RLVSSAGTGH FYTTDKNKRN MPGKFEIKKF DPVVRQHVMY KEAKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits