YRC Public Data Repository - Protein Structure Prediction

Protein:	GIDB_LACLA, RSMG...
Organism:	Lactococcus lactis subsp. lactis
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIDB_LACLA, RSMG....

Description	E-value	Query Range	Subject Range
RSMG_STRPC - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M12 (strain MGAS9...	206.0	[0..1]	[237..1]
RSMG_STRPB - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M12 (strain MGAS2...	203.0	[0..1]	[237..1]
gi\|15674490, gi\|... - gi\|15674490\|ref\|NP_268664.1\| glucose-inhibited division protein B [Streptococcus pyogenes M1 GAS], g... gi\|71852874, gi\|... - gi\|71910092\|ref\|YP_281642.1\| 16S rRNA methyltransferase GidB [Streptococcus pyogenes MGAS5005], gi\|7... RSMG_STRP1 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M1 GN=rsmG PE=3 S... GIDB_STRPY - (Q9A1D7) Methyltransferase gidB (EC 2.1.-.-) (Glucose inhibited division protein B)	203.0	[0..1]	[237..1]
RSMG_STRPM - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M28 GN=rsmG PE=3 ... RSMG_STRPQ - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M3 (strain SSI-1)... RSMG_STRP3 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M3 (strain ATCC B... RSMG_STRP3, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M3 GN=rsmG PE=3 S... RSMG_STRPM - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M28 (strain MGAS6...	203.0	[0..1]	[237..1]
RSMG_STRPF - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M4 (strain MGAS10...	200.0	[0..1]	[237..1]
RSMG_STRPD - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M2 (strain MGAS10...	200.0	[0..1]	[237..1]
RSMG_STRP8, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M18 GN=rsmG PE=3 ... RSMG_STRPG - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M5 (strain Manfre... RSMG_STRP8 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M18 (strain MGAS8...	200.0	[0..1]	[237..1]
RSMG_STRP6 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M6 (strain ATCC B... RSMG_STRP6, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M6 GN=rsmG PE=3 S...	199.0	[0..1]	[237..1]
RSMG_LACLS - Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. cremoris (strain SK11) ...	199.0	[0..1]	[238..1]
gi\|168575740, gi... - gi\|183578267\|gb\|EDT98795.1\| methyltransferase GidB [Streptococcus pneumoniae MLV-016], gi\|168575740\|... gi\|168487454, gi... - gi\|183569712\|gb\|EDT90240.1\| methyltransferase GidB [Streptococcus pneumoniae CDC1087-00], gi\|1684874... RSMG_STRP4 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae serotype 19F (strain G54... RSMG_STRPN - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae serotype 4 (strain ATCC ... GIDB_STRPN, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae GN=rsmG PE=3 SV=1, Methy... gi\|147931151, gi... - gi\|149019281\|ref\|ZP_01834643.1\| glucose-inhibited division protein B [Streptococcus pneumoniae SP23-... gi\|172042251, gi... - gi\|172042251\|gb\|EDT50297.1\| methyltransferase GidB [Streptococcus pneumoniae CDC1873-00], gi\|1684844... RSMG_STRP7 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae (strain 70585) GN=rsmG P... gi\|148998925, gi... - gi\|148998925\|ref\|ZP_01826360.1\| glucose-inhibited division protein B [Streptococcus pneumoniae SP11-... RSMG_STRZT - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN...	192.0	[0..1]	[237..1]

Back

Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPDEFLSAL TEFDIQLSDK QIKQFERYFE LLVEWNEKIN LTAITEKNEV YLKHFYDSIA  60
   61 PILYGLITDQ PVSILDIGAG AGFPSLPMKI IFPELKVTII DSLNKRINFL SLLTEELGLE 120
  121 NVTLLHGRAE DFGQDANYRG TFDFVTARAV ARLSVLTEFT IPFLKKNGIL LSLKAAQFEE 180
  181 ELNDAKKAIA TLGGKFIKEV AYELPNGDER HIALIEKKKE TPKKYPRKAG TPAKNPIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1xdzA
Description:	Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.64500705012502	bayes_pls_golite062009
rRNA methyltransferase activity	4.60300178039953	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.57389022626587	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.74830027382001	bayes_pls_golite062009
RNA methyltransferase activity	3.6174490060285	bayes_pls_golite062009
N-methyltransferase activity	3.00112136063228	bayes_pls_golite062009
protein methyltransferase activity	2.74535979387581	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	2.03602074114015	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.93015827477588	bayes_pls_golite062009
DNA-methyltransferase activity	1.8182614465692	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
histone methyltransferase activity	1.42140847541194	bayes_pls_golite062009
arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
tRNA methyltransferase activity	1.32437128142157	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.26573118969035	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.88654745691593	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	0.67380437956274	bayes_pls_golite062009
O-methyltransferase activity	0.59365370184158	bayes_pls_golite062009
rRNA (guanine-N2-)-methyltransferase activity	0.427131446117391	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.355464145533041	bayes_pls_golite062009
rRNA (cytosine) methyltransferase activity	0.346042596102079	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: