YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153826356, gi...
Organism:	Vibrio cholerae MZO-2
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153826356, gi....

Description	E-value	Query Range	Subject Range
gi\|84690282, gi\|... - gi\|84703848\|ref\|ZP_01017676.1\| 50S ribosomal protein L33 [Parvularcula bermudensis HTCC2503], gi\|846...	79.0	[0..1]	[55..30]
gi\|90437990, gi\|... - gi\|90580919\|ref\|ZP_01236721.1\| 50S ribosomal protein L33 [Vibrio angustum S14], gi\|90437990\|gb\|EAS63... gi\|89047931, gi\|... - gi\|89076360\|ref\|ZP_01162693.1\| 50S ribosomal protein L33 [Photobacterium sp. SKA34], gi\|89047931\|gb\|...	77.0	[0..1]	[55..1]
RL33_PHOPR - 50S ribosomal protein L33 OS=Photobacterium profundum (strain SS9) GN=rpmG PE=3 SV=1 gi\|148833543, gi... - gi\|149192620\|ref\|ZP_01870770.1\| 50S ribosomal protein L33 [Vibrio shilonii AK1], gi\|148833543\|gb\|EDL... gi\|90323988, gi\|... - gi\|90414932\|ref\|ZP_01222896.1\| 50S ribosomal protein L33 [Photobacterium profundum 3TCK], gi\|9032398... RL33_PHOPR - 50S ribosomal protein L33 OS=Photobacterium profundum GN=rpmG PE=3 SV=1 gi\|84378159, gi\|... - gi\|84386869\|ref\|ZP_00989893.1\| 50S ribosomal protein L33 [Vibrio splendidus 12B01], gi\|84378159\|gb\|E... gi\|85834999, gi\|... - gi\|86147284\|ref\|ZP_01065599.1\| 50S ribosomal protein L33 [Vibrio sp. MED222], gi\|85834999\|gb\|EAQ5314... RL33_VIBTL - 50S ribosomal protein L33 OS=Vibrio tasmaniensis (strain LGP32) GN=rpmG PE=3 SV=1	75.0	[0..1]	[55..1]
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	75.0	[0..1]	[54..28]
RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum GN=rpmG PE=3 SV=1 RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum (strain NCC 2705) GN=rpmG PE=3 SV=1 gi\|23336434 - gi\|23336434\|ref\|ZP_00121652.1\| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] gi\|227213107, gi... - gi\|227546450\|ref\|ZP_03976499.1\| ribosomal protein L33 [Bifidobacterium longum subsp. infantis ATCC 5... gi\|223466532, gi... - gi\|223466532\|ref\|ZP_03618068.1\| hypothetical protein BIFBRE_00234 [Bifidobacterium breve DSM 20213],...	75.0	[0..1]	[53..3]
gi\|253783292, gi... - gi\|253991842\|ref\|YP_003043198.1\| 50s ribosomal protein l33 [Photorhabdus asymbiotica], gi\|253783292\|... RL33_PHOLL - 50S ribosomal protein L33 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556... RL33_PHOLL - 50S ribosomal protein L33 OS=Photorhabdus luminescens subsp. laumondii GN=rpmG PE=3 SV=1	74.0	[0..1]	[55..1]
gi\|32307622 - gi\|32307622\|gb\|AAP79216.1\| ribosomal protein rpL33 [Bigelowiella natans]	73.0	[0..3]	[55..74]
RL33_VIBFM - 50S ribosomal protein L33 OS=Vibrio fischeri (strain MJ11) GN=rpmG PE=3 SV=1 RL33_VIBF1 - 50S ribosomal protein L33 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpmG PE=3 SV=1	73.0	[0..1]	[55..1]
RK33_CYAPA - 50S ribosomal protein L33, cyanelle OS=Cyanophora paradoxa GN=rpl33 PE=3 SV=1	73.0	[0..2]	[53..4]
RL33_BURPS - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain K96243) GN=rpmG PE=3 SV=1 RL33_BURMA - 50S ribosomal protein L33 OS=Burkholderia mallei (strain ATCC 23344) GN=rpmG PE=3 SV=1 RL33_BURM1 - 50S ribosomal protein L33 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpmG PE=3 SV=1 RL33_BURP8 - 50S ribosomal protein L33 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpmG PE=3 SV=1 RL33_BURM9 - 50S ribosomal protein L33 OS=Burkholderia mallei (strain NCTC 10229) GN=rpmG PE=3 SV=1 gi\|237811179, gi... - gi\|237811179\|ref\|YP_002895630.1\| ribosomal protein L33 [Burkholderia pseudomallei MSHR346], gi\|23750... gi\|225933455, gi... - gi\|226194370\|ref\|ZP_03789968.1\| 50S ribosomal protein L33 [Burkholderia pseudomallei Pakistan 9], gi... RL33_BURPS - 50S ribosomal protein L33 OS=Burkholderia pseudomallei GN=rpmG PE=3 SV=1 RL33_BURMA - 50S ribosomal protein L33 OS=Burkholderia mallei GN=rpmG PE=3 SV=1 gi\|169653338, gi... - gi\|67761564\|ref\|ZP_00500272.1\| COG0267: Ribosomal protein L33 [Burkholderia pseudomallei S13], gi\|25... gi\|85065422 - gi\|85065422\|ref\|ZP_01026275.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei 10229] RL33_BURMS - 50S ribosomal protein L33 OS=Burkholderia mallei (strain SAVP1) GN=rpmG PE=3 SV=1 gi\|157938549, gi... - gi\|67754753\|ref\|ZP_00493657.1\| COG0267: Ribosomal protein L33 [Burkholderia pseudomallei Pasteur], g... RL33_BURP1 - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain 1710b) GN=rpmG PE=3 SV=1 gi\|148025269, gi... - gi\|87317615\|ref\|ZP_01098622.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei 2002721280], gi\|2... gi\|134247394, gi... - gi\|134281088\|ref\|ZP_01767797.1\| 50S ribosomal protein L33 [Burkholderia pseudomallei 305], gi\|134247... RL33_BURTA - 50S ribosomal protein L33 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP... gi\|67641256, gi\|... - gi\|67641256\|ref\|ZP_00440038.1\| 50S ribosomal protein L33 [Burkholderia mallei GB8 horse 4], gi\|23852... gi\|84362608, gi\|... - gi\|84362608\|ref\|ZP_00987225.1\| COG0267: Ribosomal protein L33 [Burkholderia dolosa AUO158], gi\|25425... gi\|100233610, gi... - gi\|83678244\|ref\|ZP_00939974.1\| COG0267: Ribosomal protein L33 [Burkholderia pseudomallei 406e], gi\|1... gi\|67638005, gi\|... - gi\|67638005\|ref\|ZP_00436942.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei 10399], gi\|100917... RL33_BURM7 - 50S ribosomal protein L33 OS=Burkholderia mallei (strain NCTC 10247) GN=rpmG PE=3 SV=1 RL33_BURP6 - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain 668) GN=rpmG PE=3 SV=1 gi\|67672216, gi\|... - gi\|99911496\|ref\|ZP_01318356.1\| hypothetical protein Bpse1_03002237 [Burkholderia pseudomallei 1655],... gi\|161370776, gi... - gi\|90291780\|ref\|ZP_01211401.1\| hypothetical protein Bpse17_02003536 [Burkholderia pseudomallei 1710a... gi\|254202498, gi... - gi\|83621789\|ref\|ZP_00932197.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei FMH], gi\|25420249... gi\|194527717, gi... - gi\|83626644\|ref\|ZP_00936868.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei JHU], gi\|25420783... RL33_BURP0 - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain 1106a) GN=rpmG PE=3 SV=1 gi\|82534280, gi\|... - gi\|82534280\|ref\|ZP_00893321.1\| hypothetical protein Bpse110_02004460 [Burkholderia pseudomallei 1106... gi\|167618184 - gi\|167618184\|ref\|ZP_02386815.1\| ribosomal protein L33 [Burkholderia thailandensis Bt4] gi\|167718467 - gi\|167718467\|ref\|ZP_02401703.1\| ribosomal protein L33 [Burkholderia pseudomallei DM98] gi\|167569088 - gi\|167569088\|ref\|ZP_02361962.1\| ribosomal protein L33 [Burkholderia oklahomensis C6786] gi\|167580120 - gi\|167580120\|ref\|ZP_02372994.1\| ribosomal protein L33 [Burkholderia thailandensis TXDOH] gi\|167823103 - gi\|167823103\|ref\|ZP_02454574.1\| ribosomal protein L33 [Burkholderia pseudomallei 9] gi\|167835743 - gi\|167835743\|ref\|ZP_02462626.1\| ribosomal protein L33 [Burkholderia thailandensis MSMB43] gi\|167737516 - gi\|167737516\|ref\|ZP_02410290.1\| ribosomal protein L33 [Burkholderia pseudomallei 14] gi\|167814635 - gi\|167814635\|ref\|ZP_02446315.1\| ribosomal protein L33 [Burkholderia pseudomallei 91] gi\|166998910, gi... - gi\|243064991\|gb\|EES47177.1\| 50S ribosomal protein L33 [Burkholderia mallei PRL-20], gi\|166998910\|ref... gi\|167561866 - gi\|167561866\|ref\|ZP_02354782.1\| ribosomal protein L33 [Burkholderia oklahomensis EO147] gi\|221174669, gi... - gi\|221205831\|ref\|ZP_03578846.1\| 50S ribosomal protein L33 [Burkholderia multivorans CGD2], gi\|221174... gi\|221168848, gi... - gi\|221211487\|ref\|ZP_03584466.1\| 50S ribosomal protein L33 [Burkholderia multivorans CGD1], gi\|221168... gi\|167901648 - gi\|167901648\|ref\|ZP_02488853.1\| ribosomal protein L33 [Burkholderia pseudomallei NCTC 13177] gi\|167909898 - gi\|167909898\|ref\|ZP_02496989.1\| ribosomal protein L33 [Burkholderia pseudomallei 112] gi\|167844666 - gi\|167844666\|ref\|ZP_02470174.1\| ribosomal protein L33 [Burkholderia pseudomallei B7210] gi\|167893195 - gi\|167893195\|ref\|ZP_02480597.1\| ribosomal protein L33 [Burkholderia pseudomallei 7894] gi\|217419828, gi... - gi\|217419828\|ref\|ZP_03451334.1\| 50S ribosomal protein L33 [Burkholderia pseudomallei 576], gi\|217397... gi\|221199267, gi... - gi\|221199267\|ref\|ZP_03572311.1\| 50S ribosomal protein L33 [Burkholderia multivorans CGD2M], gi\|22118... gi\|167917920 - gi\|167917920\|ref\|ZP_02505011.1\| ribosomal protein L33 [Burkholderia pseudomallei BCC215] gi\|160696374, gi... - gi\|254175330\|ref\|ZP_04881990.1\| 50S ribosomal protein L33 [Burkholderia mallei ATCC 10399], gi\|19431...	73.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGIREKIR LVSSAGTGHF YTTDKNKRNM PGKFEIKKYD PVVRQHVVYK EAKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.39794
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits