YRC Public Data Repository - Protein Structure Prediction

Protein:	GHRL_FELCA
Organism:	Felis catus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GHRL_FELCA.

Description	E-value	Query Range	Subject Range
GHRL_CANLF - Appetite-regulating hormone OS=Canis lupus familiaris GN=GHRL PE=3 SV=1	163.0	[0..1]	[117..1]
gi\|27357900 - gi\|27357900\|gb\|AAO06965.1\|AF442491_1 ghrelin preproprotein [Meriones unguiculatus]	162.0	[0..1]	[117..1]
gi\|57619032, gi\|... - gi\|57619032\|ref\|NP_001009853.1\| ghrelin [Felis catus], gi\|50896399\|dbj\|BAD34671.1\| prepro-des-Gln14-...	162.0	[0..1]	[117..1]
gi\|34014154 - gi\|34014154\|gb\|AAQ56124.1\| preproghrelin [Dromaius novaehollandiae]	157.0	[0..1]	[113..1]
gi\|34014150 - gi\|34014150\|gb\|AAQ56122.1\| preproghrelin [Anser sp.]	156.0	[0..1]	[114..1]
gi\|34014152 - gi\|34014152\|gb\|AAQ56123.1\| preproghrelin [Anas platyrhynchos]	153.0	[0..1]	[114..1]
gi\|13603381 - gi\|13603381\|gb\|AAK30002.1\| preproghrelin des14Q [Sus scrofa]	152.0	[0..1]	[117..1]
gi\|50300448 - gi\|50300448\|dbj\|BAD29731.1\| preproghrelin-2 [Trachemys scripta elegans]	152.0	[0..1]	[113..1]
GHRL - ghrelin/obestatin prepropeptide	144.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPGTVCSL LLFSMLWADL AMAGSSFLSP EHQKVQQRKE SKKPPAKLQP RALEGLIHPE  60
   61 DTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVEGAEDELE IRFNAPFDVG IKLSGAQYHQ HGQALGKFLQ DVLWEEADEV LADE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.823909
Match:	PF04643.3
Description:	No description for PF04643.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits