YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148872312, gi...
Organism:	Yersinia pestis CA88-4125
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148872312, gi....

Description	E-value	Query Range	Subject Range
gi\|77633603 - gi\|77633603\|ref\|ZP_00795726.1\| COG1484: DNA replication protein [Yersinia pestis Angola]	6.0E-59	[1..259]	[10..268]
gi\|115348099, gi... - gi\|5834741\|emb\|CAB55239.1\| putative IS100 transposase [Yersinia pestis CO92], gi\|5834687\|emb\|CAB5518... gi\|6009454, gi\|3... - gi\|6009454\|dbj\|BAA84913.1\| orf78 [Escherichia coli], gi\|32470047\|ref\|NP_862989.1\| transposase/IS pro... gi\|229896930, gi... - gi\|229897024\|ref\|ZP_04512183.1\| transposase [Yersinia pestis Pestoides A], gi\|229897005\|ref\|ZP_04512... gi\|229900021, gi... - gi\|229900374\|ref\|ZP_04515507.1\| transposase [Yersinia pestis biovar Orientalis str. India 195], gi\|2... gi\|229695091, gi... - gi\|229897827\|ref\|ZP_04512981.1\| transposase [Yersinia pestis biovar Orientalis str. PEXU2], gi\|22989... gi\|229903850, gi... - gi\|229904881\|ref\|ZP_04519990.1\| transposase [Yersinia pestis Nepal516], gi\|229904792\|ref\|ZP_04519902... gi\|165922826, gi... - gi\|165928414\|ref\|ZP_02224246.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|153997365, gi... - gi\|153997682\|ref\|ZP_02022777.1\| putative ATP-binding protein [Yersinia pestis CA88-4125], gi\|1539976... gi\|195182831 - gi\|195182831\|dbj\|BAG66403.1\| predicted transposase [Escherichia coli O111:H-] gi\|167401918, gi... - gi\|167402522\|ref\|ZP_02307975.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|165989510, gi... - gi\|166011562\|ref\|ZP_02232460.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|165937440, gi... - gi\|165940222\|ref\|ZP_02228752.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|110345576, gi... - gi\|110644723\|ref\|YP_672453.1\| transposase/IS protein [Escherichia coli 536], gi\|110643984\|ref\|YP_671... gi\|25299919, gi\|... - pir\|\|T14971 probable transposase - Yersinia pestis plasmid pMT1 and pCD1 insertion sequence, gi\|527... gi\|22127670, gi\|... - gi\|3883054\|gb\|AAC82714.1\| IS transposase [Yersinia pestis KIM], gi\|3822050\|gb\|AAC69770.1\| putative t... gi\|45441314, gi\|... - gi\|45478713\|ref\|NP_995568.1\| transposase/IS protein [Yersinia pestis biovar Microtus str. 91001], gi...	8.0E-59	[1..259]	[2..260]
gi\|108779650, gi... - gi\|108807737\|ref\|YP_651653.1\| transposase/IS protein [Yersinia pestis Antiqua], gi\|108779650\|gb\|ABG1...	9.0E-59	[1..259]	[1..259]
gi\|221589259, gi... - gi\|98978968\|gb\|ABF59980.1\| ATP-binding protein [Escherichia coli], gi\|222104831\|ref\|YP_002539320.1\| ... gi\|75514029 - gi\|75514029\|ref\|ZP_00736359.1\| COG1484: DNA replication protein [Escherichia coli 53638] gi\|194358515, gi... - gi\|194447071\|ref\|YP_002039121.1\| IS100 transposase orfB [Salmonella enterica subsp. enterica serovar...	9.0E-59	[1..259]	[1..259]
gi\|75259138, gi\|... - gi\|75259138\|ref\|ZP_00730486.1\| COG1484: DNA replication protein [Escherichia coli E22], gi\|193062952...	1.0E-58	[1..259]	[1..259]
gi\|110343786, gi... - gi\|110642194\|ref\|YP_669924.1\| transposase/IS protein [Escherichia coli 536], gi\|110343786\|gb\|ABG7002... gi\|227885507, gi... - gi\|227885507\|ref\|ZP_04003312.1\| ATP-binding protein [Escherichia coli 83972], gi\|227837520\|gb\|EEJ479... gi\|191170250, gi... - gi\|75242823\|ref\|ZP_00726529.1\| COG1484: DNA replication protein [Escherichia coli F11], gi\|191170250...	1.0E-58	[1..259]	[1..259]
gi\|26248359, gi\|... - gi\|26248359\|ref\|NP_754399.1\| transposase/IS protein [Escherichia coli CFT073], gi\|26108763\|gb\|AAN809... gi\|91211270, gi\|... - gi\|91211270\|ref\|YP_541256.1\| transposase/IS protein [Escherichia coli UTI89], gi\|91072844\|gb\|ABE0772...	1.0E-58	[1..259]	[2..260]
gi\|209901061, gi... - gi\|209901199\|ref\|YP_002286980.1\| hypothetical protein pKlebpneu12_p55 [Klebsiella pneumoniae], gi\|20... gi\|20086788 - gi\|20086788\|gb\|AAM10642.1\|AF481906_3 putative transposition helper protein [Salmonella enterica subs... gi\|157170702, gi... - gi\|157170702\|emb\|CAO82095.1\| putative transposition helper protein [Enterobacter cloacae], gi\|116263... gi\|167077401 - gi\|167077401\|gb\|ABZ10930.1\| helper protein [Pseudomonas aeruginosa] gi\|116263779 - gi\|116263779\|gb\|ABJ91194.1\| putative transposition helper protein [Escherichia coli]	1.0E-58	[2..259]	[1..259]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMELQHQRLM ALAGQLQLES LISAAPALSQ QAVDQEWSYM DFLEHLLHEE KLARHQRKQA  60
   61 MYTRMAAFPA VKTFEEYDFT FATGAPQKQL QSLRSLSFIE RNENIVLLGP SGVGKTHLAI 120
  121 AMGYEAVRAG IKVRFTTAAD LLLQLSTAQR QGRYKTTLQR GVMAPRLLII DEIGYLPFSQ 180
  181 EEAKLFFQVI AKRYEKSAMI LTSNLPFGQW DQTFAGDAAL TSAMLDRILH HSHVVQIKGE 240
  241 SYRLRQKRKA GVIAEANPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	2qgzA
Description:	No description for 2qgzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits