YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|144985870, gi...
Organism:	Haemophilus influenzae 3655
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|144985870, gi....

Description	E-value	Query Range	Subject Range
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	162.0	[0..1]	[108..32]
gi\|166961388, gi... - gi\|167420582\|ref\|ZP_02312335.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. MG05-10... gi\|229695559, gi... - gi\|229839193\|ref\|ZP_04459352.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ... gi\|167423107, gi... - gi\|167423107\|ref\|ZP_02314860.1\| ribosomal protein S6 [Yersinia pestis biovar Mediaevalis str. K19730... gi\|229836649, gi... - gi\|229836649\|ref\|ZP_04456815.1\| 30S ribosomal subunit protein S6 [Yersinia pestis Pestoides A], gi\|2... RS6_YERPY - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsF PE=3 SV=... RS6_YERPB - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsF PE=3 SV=1 gi\|165919840, gi... - gi\|165928153\|ref\|ZP_02223985.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. F199101... gi\|165989687, gi... - gi\|166011303\|ref\|ZP_02232201.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. E1979001],... gi\|166214044, gi... - gi\|166214044\|ref\|ZP_02240079.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. B42003004]... gi\|167049370, gi... - gi\|167401345\|ref\|ZP_02306845.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. UG05-0454]... RS6_YERE8 - 30S ribosomal protein S6 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8... gi\|165937530, gi... - gi\|89102329\|ref\|ZP_01174971.1\| COG0360: Ribosomal protein S6 [Yersinia pestis biovar Orientalis str.... RS6_YERPA - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsF PE=3 SV=1 RS6_YERPN - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsF PE=3 SV=1 gi\|149288953, gi... - gi\|153997316\|ref\|ZP_02022416.1\| 30S ribosomal protein S6 [Yersinia pestis CA88-4125], gi\|149288953\|g... gi\|45435253, gi\|... - gi\|45440396\|ref\|NP_991935.1\| 30S ribosomal protein S6 [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124559, gi\|... - gi\|22124559\|ref\|NP_667982.1\| 30S ribosomal protein S6 [Yersinia pestis KIM], gi\|21957359\|gb\|AAM84233... gi\|15981463, gi\|... - gi\|218930553\|ref\|YP_002348428.1\| 30S ribosomal protein S6 [Yersinia pestis CO92], gi\|16123685\|ref\|NP... RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpsF PE=3 SV=... gi\|77961292 - gi\|77961292\|ref\|ZP_00825133.1\| COG0360: Ribosomal protein S6 [Yersinia mollaretii ATCC 43969] RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis GN=rpsF PE=3 SV=1 gi\|77958749 - gi\|77958749\|ref\|ZP_00822777.1\| COG0360: Ribosomal protein S6 [Yersinia bercovieri ATCC 43970] RS6_YERPG - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpsF PE=3 SV=1 RS6_YERP3 - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsF PE=3... RS6_YERPE - 30S ribosomal protein S6 OS=Yersinia pestis GN=rpsF PE=3 SV=1 gi\|77973976 - gi\|77973976\|ref\|ZP_00829519.1\| COG0360: Ribosomal protein S6 [Yersinia frederiksenii ATCC 33641] gi\|77977622 - gi\|77977622\|ref\|ZP_00833066.1\| COG0360: Ribosomal protein S6 [Yersinia intermedia ATCC 29909] gi\|229899757, gi... - gi\|229899757\|ref\|ZP_04514898.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...	159.0	[0..1]	[124..1]
RS6_PASMU - 30S ribosomal protein S6 OS=Pasteurella multocida GN=rpsF PE=3 SV=1 RS6_PASMU - 30S ribosomal protein S6 OS=Pasteurella multocida (strain Pm70) GN=rpsF PE=3 SV=1	159.0	[0..1]	[125..1]
RS6_AROAE - 30S ribosomal protein S6 OS=Aromatoleum aromaticum (strain EbN1) GN=rpsF PE=3 SV=1	159.0	[0..1]	[124..1]
EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts RS6_ECOLI - 30S ribosomal protein S6 [Contains: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal ... EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts	158.0	[0..1]	[125..1]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	158.0	[0..1]	[115..1]
RS6_MANSM - 30S ribosomal protein S6 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsF PE=3 SV=1	157.0	[0..1]	[125..1]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	157.0	[0..1]	[123..1]
RS6_HISS2 - 30S ribosomal protein S6 OS=Histophilus somni (strain 2336) GN=rpsF PE=3 SV=1	157.0	[0..1]	[125..1]
RS6_HAES1 - 30S ribosomal protein S6 OS=Haemophilus somnus (strain 129Pt) GN=rpsF PE=3 SV=1	156.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFMV HPDQSEQVPG MIERYTGSVK EAGGQVHRLE DWGRRQLAYP INKLHKAHYV  60
   61 LMNVEAPQQV IDELETTFRY NDAVLRSLVI HTKHAVTEAS PMKAAKEERK PLAEVENNDF 120
  121 EDAEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits