YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|149291953, gi...
Organism: Yersinia pestis CA88-4125
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149291953, gi....

Description E-value Query
Range
Subject
Range
NUOB_PHOLL - NADH-quinone oxidoreductase subunit B OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139...
NUOB_PHOLL - NADH-quinone oxidoreductase subunit B OS=Photorhabdus luminescens subsp. laumondii GN=nuoB PE=3 SV=1
3.0E-82 [1..225] [1..224]
gi|23092541 - gi|23092541|gb|AAN08352.1| NADH dehydrogenase I subunit B [Photorhabdus temperata]
gi|23092541|gb|A... - NADH dehydrogenase I subunit B [Photorhabdus temperata]
4.0E-82 [1..225] [1..224]
gi|213420337 - gi|213420337|ref|ZP_03353403.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
gi|213052942 - gi|213052942|ref|ZP_03345820.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
NUOB_SALEP - NADH-quinone oxidoreductase subunit B OS=Salmonella enteritidis PT4 (strain P125109) GN=nuoB PE=3 SV...
NUOB_SALG2 - NADH-quinone oxidoreductase subunit B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nuoB ...
gi|213647303 - gi|213647303|ref|ZP_03377356.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
gi|213610191 - gi|213610191|ref|ZP_03370017.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
gi|213581020 - gi|213581020|ref|ZP_03362846.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
gi|213427012 - gi|213427012|ref|ZP_03359762.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
gi|197261696, gi... - gi|197261696|ref|ZP_03161770.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. e...
NUOB_SALA4 - NADH-quinone oxidoreductase subunit B OS=Salmonella agona (strain SL483) GN=nuoB PE=3 SV=1
NUOB_SALSV - NADH-quinone oxidoreductase subunit B OS=Salmonella schwarzengrund (strain CVM19633) GN=nuoB PE=3 SV...
gi|194458667, gi... - gi|194472303|ref|ZP_03078287.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. e...
gi|204928974, gi... - gi|204928974|ref|ZP_03220117.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. e...
gi|200386648, gi... - gi|200386648|ref|ZP_03213260.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. e...
NUOB_SALDC - NADH-quinone oxidoreductase subunit B OS=Salmonella dublin (strain CT_02021853) GN=nuoB PE=3 SV=1
NUOB_SALPK - NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi A (strain AKU_12601) GN=nuoB PE=3 SV=1
NUOB_SALTY - NADH-quinone oxidoreductase subunit B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720...
gi|29141052, gi|... - gi|29141052|ref|NP_804394.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serov...
lcl|NC_016856.1_... - [gene=nuoB] [protein=NADH dehydrogenase subunit B] [protein_id=YP_005238403.1] [location=complement(...
NUOB_SALTI - NADH-quinone oxidoreductase subunit B OS=Salmonella typhi GN=nuoB PE=3 SV=1
NUOB_SALPB - NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nuo...
gi|16761252 - gi|16761252|ref|NP_456869.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serov...
NUOB_SALPC - NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi C (strain RKS4594) GN=nuoB PE=3 SV=1
gi|214002000 - gi|214002000|ref|ZP_03412735.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
gi|205349478, gi... - gi|205349478|gb|EDZ36109.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
gi|205338322, gi... - gi|205338322|gb|EDZ25086.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
gi|168237344, gi... - gi|197289718|gb|EDY29081.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
gi|205335598, gi... - gi|205335598|gb|EDZ22362.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
NUOB_SALHS - NADH-quinone oxidoreductase subunit B OS=Salmonella heidelberg (strain SL476) GN=nuoB PE=3 SV=1
NUOB_SALNS - NADH-quinone oxidoreductase subunit B OS=Salmonella newport (strain SL254) GN=nuoB PE=3 SV=1
gi|168817943, gi... - gi|205345026|gb|EDZ31790.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
gi|195631416, gi... - gi|195631416|gb|EDX49976.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
NUOB_SALCH - NADH-quinone oxidoreductase subunit B OS=Salmonella choleraesuis (strain SC-B67) GN=nuoB PE=3 SV=1
NUOB_SALPA - NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nuoB ...
gi|167994675, gi... - gi|205327503|gb|EDZ14267.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
NUOB_SALCH - NADH-quinone oxidoreductase subunit B OS=Salmonella choleraesuis GN=nuoB PE=3 SV=1
gi|167549674, gi... - gi|205325363|gb|EDZ13202.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enter...
gi|238912394 - gi|238912394|ref|ZP_04656231.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica se...
NUOB_SALPB - NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nuo...
NUOB_SALPA - NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi A GN=nuoB PE=3 SV=1
NUOB_SALAR - NADH-quinone oxidoreductase subunit B OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2...
NUOB_SALTY - NADH-quinone oxidoreductase subunit B OS=Salmonella typhimurium GN=nuoB PE=3 SV=1
6.0E-82 [1..225] [1..220]
gi|397899 - gi|397899|emb|CAA48361.1| NADH dehydrogenase I, subunit nuoB [Escherichia coli]
8.0E-82 [1..225] [1..220]
gi|227835693, gi... - gi|227887343|ref|ZP_04005148.1| NADH dehydrogenase subunit B [Escherichia coli 83972], gi|227835693|...
gi|237704761, gi... - gi|237704761|ref|ZP_04535242.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp. 3_...
NUOB_ECOBW - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=nuoB PE=...
gi|251785647, gi... - gi|251785647|ref|YP_002999951.1| hypothetical protein B21_02172 [Escherichia coli BL21], gi|24237792...
gi|253978364, gi... - gi|254289057|ref|YP_003054805.1| NADH dehydrogenase subunit B [Escherichia coli BL21(DE3)], gi|25397...
gi|168755039, gi... - gi|189357731|gb|EDU76150.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
gi|253974197, gi... - gi|254162296|ref|YP_003045404.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606], gi|2...
gi|188017366, gi... - gi|188017366|gb|EDU55488.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
gi|254794179, gi... - gi|254794179|ref|YP_003079016.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 s...
NUOB_SHIFL - NADH-quinone oxidoreductase subunit B OS=Shigella flexneri GN=nuoB PE=3 SV=1
gi|24052724, gi|... - gi|24113659|ref|NP_708169.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 301], gi|240527...
NUOB_ECOK1 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O1:K1 / APEC GN=nuoB PE=3 SV=1
gi|124501923, gi... - gi|124526452|ref|ZP_01698405.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B], gi|1245...
NUOB_ECO57 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O157:H7 GN=nuoB PE=3 SV=1
EG12083 - NADH:ubiquinone oxidoreductase, chain B / NADH:ubiquinone oxidoreductase subunit B, complex I; NADH ...
NUOB_ECOL6 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)...
gi|30041968, gi|... - gi|30063713|ref|NP_837884.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 2457T], gi|3004...
gi|170123817, gi... - gi|170767483|ref|ZP_02901936.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii TW07627...
NUOB_ECOSM - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nuoB PE=3 SV=1
gi|195935664 - gi|195935664|ref|ZP_03081046.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. EC4024]
gi|194433374, gi... - gi|194433374|ref|ZP_03065654.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012], ...
gi|208814079, gi... - gi|208814079|ref|ZP_03255408.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str...
gi|208728164, gi... - gi|208808363|ref|ZP_03250700.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str...
NUOB_ECO5E - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nuoB PE=...
NUOB_ECOLI - NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH dehydrogenase I, chain B) (NDH-1, chain B) (...
gi|208821251, gi... - gi|208821251|ref|ZP_03261571.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str...
gi|75512759, gi|... - gi|75512759|ref|ZP_00735261.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
gi|168767913, gi... - gi|189362998|gb|EDU81417.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
NUOB_SHISS - NADH-quinone oxidoreductase subunit B OS=Shigella sonnei (strain Ss046) GN=nuoB PE=3 SV=1
gi|189368240, gi... - gi|189368240|gb|EDU86656.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
gi|190909510, gi... - gi|75243098|ref|ZP_00726804.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
gi|189001940, gi... - gi|189001940|gb|EDU70926.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
gi|75259745, gi|... - gi|75259745|ref|ZP_00731047.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
gi|187771211, gi... - gi|187771211|gb|EDU35055.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
gi|189378981, gi... - gi|189378981|gb|EDU97397.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
gi|189372840, gi... - gi|189372840|gb|EDU91256.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC...
NUOB_SHIBS - NADH-quinone oxidoreductase subunit B OS=Shigella boydii serotype 4 (strain Sb227) GN=nuoB PE=3 SV=1
NUOB_ECODH - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain K12 / DH10B) GN=nuoB PE=3 SV=1
gi|89109105, gi|... - gi|89109105|ref|AP_002885.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 sub...
NUOB_ECOLC - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=...
NUOB_SHIB3 - NADH-quinone oxidoreductase subunit B OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN...
NUOB_ECO24 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nuoB P...
gi|194424696, gi... - gi|83588270|ref|ZP_00926895.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
gi|75230332, gi|... - gi|75230332|ref|ZP_00716822.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
gi|75238070, gi|... - gi|75238070|ref|ZP_00722075.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
NUOB_ECOHS - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O9:H4 (strain HS) GN=nuoB PE=3 SV=1
gi|194414847, gi... - gi|75211690|ref|ZP_00711769.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
NUOB_ECOL6 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O6 GN=nuoB PE=3 SV=1
sp|B7UFU5|NUOB_ECO27 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nuoB P...
EG12083 - NADH:ubiquinone oxidoreductase, chain B / NADH:ubiquinone oxidoreductase subunit B, complex I; NADH ...
NUOB_ECOLU - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nuo...
NUOB_ECO7I - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nuoB PE=3 ...
NUOB_ECO27 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nuoB P...
NUOB_ECOSE - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain SE11) GN=nuoB PE=3 SV=1
NUOB_ESCF3 - NADH-quinone oxidoreductase subunit B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC...
gi|217327914, gi... - gi|217327914|ref|ZP_03443997.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str...
NUOB_ECO45 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nuoB PE=3 S...
NUOB_ECO8A - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O8 (strain IAI1) GN=nuoB PE=3 SV=1
NUOB_ECO55 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain 55989 / EAEC) GN=nuoB PE=3 SV=1
NUOB_ECO81 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O81 (strain ED1a) GN=nuoB PE=3 SV=1
NUOB_ECOL5 - NADH-quinone oxidoreductase subunit B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nuoB PE=...
NUOB_SHIF8 - NADH-quinone oxidoreductase subunit B OS=Shigella flexneri serotype 5b (strain 8401) GN=nuoB PE=3 SV...
NUOB_ECOUT - NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain UTI89 / UPEC) GN=nuoB PE=3 SV=1
gi|13362641, gi|... - gi|15832425|ref|NP_311198.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. Sakai], gi|...
1.0E-81 [1..225] [1..220]
NUOB_SHIDS - NADH-quinone oxidoreductase subunit B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nuoB PE=3...
2.0E-81 [1..225] [1..220]
gi|15802834, gi|... - gi|15802834|ref|NP_288861.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 EDL933], gi|1251...
gi|25298992 - gi|25298992|pir||D85869 NADH dehydrogenase I chain B [imported] - Escherichia coli (strain O157:H7,...
2.0E-81 [1..225] [1..220]
NUOB_ERWCA - (O85274) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH dehydrogenase I, chain B) (NDH-1, c...
NUOB_PECCP - NADH-quinone oxidoreductase subunit B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) ...
gi|227326166 - gi|227326166|ref|ZP_03830190.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp. caro...
NUOB_ERWCT - NADH-quinone oxidoreductase subunit B OS=Erwinia carotovora subsp. atroseptica GN=nuoB PE=3 SV=1
NUOB_PECAS - NADH-quinone oxidoreductase subunit B OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-67...
NUOB_PECCC - NADH-quinone oxidoreductase subunit B OS=Pectobacterium carotovorum subsp. carotovorum GN=nuoB PE=3 ...
4.0E-81 [1..225] [1..224]
NUOB_YERP3 - NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)...
1.0E-80 [1..225] [1..227]
gi|126194448, gi... - gi|84326963|ref|ZP_00974987.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
gi|107102158 - gi|107102158|ref|ZP_01366076.1| hypothetical protein PaerPA_01003208 [Pseudomonas aeruginosa PACS2]
NUOB_PSEAE - NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa GN=nuoB PE=3 SV=1
NUOB_PSEAB - NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nuoB PE=3 SV=...
NUOB_PSEA8 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain LESB58) GN=nuoB PE=3 SV=1
NUOB_PSEAE - NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS...
gi|84320604, gi|... - gi|84320604|ref|ZP_00968977.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-...
1.0E-79 [1..225] [1..225]

Back

Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYTLTRIDP NGENDRYPLQ TQETVSGDPL EQHVHRSVYM GKLENAMHDM VNWGRKNSLW  60
   61 PYNFGLSCCY VEMVTSFTAV HDVARFGAEV LRASPRQADF MVVAGTCFTK MAPVIQRLYE 120
  121 QMLEPKWVIS MGACANSGGM YDIYSVVQGV DKFLPVDVYI PGCPPRPEAY MQALLLLQES 180
  181 IGKERRPLSW VVGDQGVYRA NMQPERERKH AERIAVTNLR TPDEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 2fug6
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NADH dehydrogenase activity 13.9361001493201 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 12.823760326196 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 12.8237449606378 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 12.2946357205778 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 11.5463682902166 bayes_pls_golite062009
oxidoreductase activity 6.65509281399906 bayes_pls_golite062009
4 iron, 4 sulfur cluster binding 5.96984573452012 bayes_pls_golite062009
oxidoreduction-driven active transmembrane transporter activity 5.23135981388428 bayes_pls_golite062009
iron-sulfur cluster binding 4.95810064745013 bayes_pls_golite062009
metal cluster binding 4.95810064745013 bayes_pls_golite062009
oxidoreductase activity, acting on hydrogen as donor 1.94254997143399 bayes_pls_golite062009
catalytic activity 1.41356903593784 bayes_pls_golite062009
transporter activity 1.35313139085437 bayes_pls_golite062009
ferredoxin hydrogenase activity 1.17664896715936 bayes_pls_golite062009
oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor 1.17664896715936 bayes_pls_golite062009
transmembrane transporter activity 1.14096979892017 bayes_pls_golite062009
binding 0.666284431609449 bayes_pls_golite062009
active transmembrane transporter activity 0.3569377519136 bayes_pls_golite062009
primary active transmembrane transporter activity 0.345046820478722 bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors 0.100407685917506 bayes_pls_golite062009
protein binding 0.0224428394870909 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle