YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254291217, gi...
Organism:	Vibrio cholerae AM-19226
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254291217, gi....

Description	E-value	Query Range	Subject Range
gi\|84390120, gi\|... - gi\|84390120\|ref\|ZP_00991382.1\| protein-L-isoaspartate O-methyltransferase [Vibrio splendidus 12B01],...	171.0	[0..1]	[208..1]
PIMT_VIBTL - Protein-L-isoaspartate O-methyltransferase OS=Vibrio tasmaniensis (strain LGP32) GN=pcm PE=3 SV=1 gi\|86146343, gi\|... - gi\|86146343\|ref\|ZP_01064667.1\| protein-L-isoaspartate O-methyltransferase [Vibrio sp. MED222], gi\|85...	170.0	[0..1]	[208..1]
PIMT_PHOLL - Protein-L-isoaspartate O-methyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain DSM ... PIMT_PHOLL - Protein-L-isoaspartate O-methyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=pcm PE=3 ...	166.0	[0..1]	[208..1]
gi\|90580344, gi\|... - gi\|90580344\|ref\|ZP_01236151.1\| protein-L-isoaspartate O-methyltransferase [Vibrio angustum S14], gi\|...	166.0	[0..7]	[208..8]
gi\|89075070, gi\|... - gi\|89075070\|ref\|ZP_01161511.1\| protein-L-isoaspartate O-methyltransferase [Photobacterium sp. SKA34]...	166.0	[0..7]	[208..8]
PIMT_SALCH - Protein-L-isoaspartate O-methyltransferase OS=Salmonella choleraesuis GN=pcm PE=3 SV=1 gi\|205338108, gi... - gi\|205338108\|gb\|EDZ24872.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|205328772, gi... - gi\|205328772\|gb\|EDZ15536.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|167550221, gi... - gi\|205324765\|gb\|EDZ12604.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... PIMT_SALPB - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PIMT_SALTY - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhimurium GN=pcm PE=3 SV=1 PIMT_SALPB - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PIMT_SALCH - Protein-L-isoaspartate O-methyltransferase OS=Salmonella choleraesuis GN=pcm PE=3 SV=1 PIMT_SALTY - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... PIMT_SALEP - Protein-L-isoaspartate O-methyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=pcm PE=... PIMT_SALG2 - Protein-L-isoaspartate O-methyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=... gi\|204928018, gi... - gi\|204928018\|ref\|ZP_03219218.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... gi\|200388613, gi... - gi\|200388613\|ref\|ZP_03215225.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... PIMT_SALPC - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=pcm PE=3 SV... PIMT_SALNS - Protein-L-isoaspartate O-methyltransferase OS=Salmonella newport (strain SL254) GN=pcm PE=3 SV=1 gi\|205342874, gi... - gi\|205342874\|gb\|EDZ29638.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|195633485, gi... - gi\|195633485\|gb\|EDX51899.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|168261944, gi... - gi\|205349120\|gb\|EDZ35751.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... PIMT_SALDC - Protein-L-isoaspartate O-methyltransferase OS=Salmonella dublin (strain CT_02021853) GN=pcm PE=3 SV=... PIMT_SALCH - Protein-L-isoaspartate O-methyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=pcm PE=3 SV... gi\|197262822, gi... - gi\|197262822\|ref\|ZP_03162896.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... PIMT_SALA4 - Protein-L-isoaspartate O-methyltransferase OS=Salmonella agona (strain SL483) GN=pcm PE=3 SV=1 PIMT_SALHS - Protein-L-isoaspartate O-methyltransferase OS=Salmonella heidelberg (strain SL476) GN=pcm PE=3 SV=1 PIMT_SALTY - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhimurium GN=pcm PE=3 SV=1 lcl\|NC_016856.1_... - [gene=pcm] [protein=protein-L-isoaspartate O-methyltransferase] [protein_id=YP_005239038.1] [locatio... gi\|238909695 - gi\|238909695\|ref\|ZP_04653532.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs...	165.0	[0..1]	[208..1]
gi\|165915279, gi... - gi\|89105878\|ref\|ZP_01178390.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Yersinia p... PIMT_YERPA - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pcm PE... PIMT_YERPN - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=pcm P... gi\|153997599, gi... - gi\|153997599\|ref\|ZP_02022699.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis CA88-412... PIMT_YERPP - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pestis (strain Pestoides F) GN=pcm PE=3 SV=1 PIMT_YERPE - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pestis GN=pcm PE=3 SV=1 PIMT_YERPG - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=pcm PE=... PIMT_YERP3 - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 3... PIMT_YERPS - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pseudotuberculosis GN=pcm PE=3 SV=1 gi\|165925665, gi... - gi\|165925665\|ref\|ZP_02221497.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar O... gi\|166205863, gi... - gi\|166213076\|ref\|ZP_02239111.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar A... gi\|165990964, gi... - gi\|166010057\|ref\|ZP_02230955.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar A... gi\|229838984, gi... - gi\|229838984\|ref\|ZP_04459143.1\| L-isoaspartate protein carboxylmethyltransferase type II [Yersinia p... gi\|166960547, gi... - gi\|167421628\|ref\|ZP_02313381.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar O... gi\|229700538, gi... - gi\|229896464\|ref\|ZP_04511632.1\| L-isoaspartate protein carboxylmethyltransferase type II [Yersinia p... gi\|167051506, gi... - gi\|167399002\|ref\|ZP_02304526.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar A... gi\|229687043, gi... - gi\|229899551\|ref\|ZP_04514692.1\| L-isoaspartate protein carboxylmethyltransferase type II [Yersinia p... PIMT_YERPY - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII... PIMT_YERPB - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+)... gi\|21957561, gi\|... - gi\|22124743\|ref\|NP_668166.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis KIM], gi\|21... PIMT_YERPS - Protein-L-isoaspartate O-methyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953... gi\|45440187, gi\|... - gi\|45440187\|ref\|NP_991726.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar Micr... gi\|167469872 - gi\|167469872\|ref\|ZP_02334576.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis FV-1] gi\|16123507, gi\|... - gi\|218930375\|ref\|YP_002348250.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis CO92], ... gi\|167057508, gi... - gi\|167423338\|ref\|ZP_02315091.1\| protein-L-isoaspartate O-methyltransferase [Yersinia pestis biovar M...	165.0	[0..1]	[208..1]
PIMT_ERWCT - Protein-L-isoaspartate O-methyltransferase OS=Erwinia carotovora subsp. atroseptica GN=pcm PE=3 SV=1 PIMT_PECAS - Protein-L-isoaspartate O-methyltransferase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC B...	165.0	[0..1]	[208..1]
gi\|77976006 - gi\|77976006\|ref\|ZP_00831539.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Yersinia f...	163.0	[0..1]	[208..1]
gi\|91204215 - gi\|91204215\|emb\|CAJ71868.1\| strongly similar to protein-L-isoaspartate O-methyltransferase [Candidat...	163.0	[0..4]	[205..40]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPKADRLI QFLTEQGITS PQVLAAIHAL PREFFVAPAM MHQAYDNNAL PIGQGQTISQ  60
   61 PYIVAKMTEL LALTPETKVL EIGTGSGYQT AVLAKLVNHV FTVERIKTLQ WDAKRRLKQL 120
  121 DIYNVSTKHG DGWQGWPARG PFDAILVTAA AAKVPQSLLD QLAEGGRMVI PVGEDEQYLY 180
  181 KIVRQGGQFI SERVEAVRFV PLVAGDLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1jg1A
Description:	Protein-L-isoaspartyl O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein methyltransferase activity	5.03267617653315	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	4.4632173842967	bayes_pls_golite062009
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
N-methyltransferase activity	4.07806017452628	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
histone methyltransferase activity	3.97658336148086	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	3.26663548517117	bayes_pls_golite062009
arginine N-methyltransferase activity	3.26663548517117	bayes_pls_golite062009
transferase activity	2.926540904444	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	2.86617323549909	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	2.48017990451667	bayes_pls_golite062009
O-methyltransferase activity	2.46301422147246	bayes_pls_golite062009
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.27866575945018	bayes_pls_golite062009
DNA-methyltransferase activity	2.18991764495147	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	1.91133457052099	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	1.69391860928068	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
protein-arginine omega-N symmetric methyltransferase activity	1.15089820497406	bayes_pls_golite062009
RNA methyltransferase activity	0.817509452491588	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-lysine N-methyltransferase activity	0.469870476227704	bayes_pls_golite062009
histone-lysine N-methyltransferase activity	0.469870476227704	bayes_pls_golite062009
lysine N-methyltransferase activity	0.469870476227704	bayes_pls_golite062009
binding	0.383237930789959	bayes_pls_golite062009
rRNA methyltransferase activity	0.230719796976667	bayes_pls_golite062009
nucleic acid binding	0.103639608104023	bayes_pls_golite062009
DNA binding	0.0844856573974502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: