YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148994105, gi...
Organism:	Streptococcus pneumoniae SP9-BS68
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148994105, gi....

Description	E-value	Query Range	Subject Range
gi\|30692518, gi\|... - gi\|30692518\|gb\|AAP33390.1\| CrcB [Bacillus thuringiensis serovar aizawai], gi\|221665115\|gb\|ACM24761.1...	95.0	[0..4]	[107..177]
gi\|67545817, gi\|... - gi\|67545817\|ref\|ZP_00423736.1\| Camphor resistance CrcB protein [Burkholderia vietnamiensis G4], gi\|6...	93.0	[0..3]	[108..102]
gi\|25304880 - pir\|\|C98018 crcB protein [imported] - Streptococcus pneumoniae (strain R6) CRCB1_STRR6 - Putative fluoride ion transporter CrcB 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=c... gi\|168491213, gi... - gi\|183574470\|gb\|EDT94998.1\| putative crcB protein [Streptococcus pneumoniae CDC0288-04], gi\|16849121... gi\|116076502, gi... - gi\|116515926\|ref\|YP_816617.1\| CrcB protein [Streptococcus pneumoniae D39], gi\|116076502\|gb\|ABJ54222....	93.0	[0..1]	[109..1]
gi\|88183696, gi\|... - gi\|88183696\|gb\|EAQ91164.1\| hypothetical protein CHGG_03099 [Chaetomium globosum CBS 148.51], gi\|1162...	92.0	[0..3]	[107..346]
CRCB1_BRUAB - Putative fluoride ion transporter CrcB 1 OS=Brucella abortus biovar 1 (strain 9-941) GN=crcB1 PE=3 S... gi\|225617827, gi... - gi\|225627822\|ref\|ZP_03785859.1\| CrcB family protein [Brucella ceti str. Cudo], gi\|225617827\|gb\|EEH14... gi\|254694057 - gi\|254694057\|ref\|ZP_05155885.1\| camphor resistance protein CrcB [Brucella abortus bv. 3 str. Tulya] gi\|254697708 - gi\|254697708\|ref\|ZP_05159536.1\| camphor resistance protein CrcB [Brucella abortus bv. 2 str. 86/8/59... gi\|237789068, gi... - gi\|237815770\|ref\|ZP_04594767.1\| CrcB family protein [Brucella abortus str. 2308 A], gi\|237789068\|gb\|... gi\|254689568 - gi\|254689568\|ref\|ZP_05152822.1\| camphor resistance protein CrcB [Brucella abortus bv. 6 str. 870] gi\|254710418 - gi\|254710418\|ref\|ZP_05172229.1\| camphor resistance protein CrcB [Brucella pinnipedialis B2/94] gi\|254730598 - gi\|254730598\|ref\|ZP_05189176.1\| camphor resistance protein CrcB [Brucella abortus bv. 4 str. 292] gi\|254702093 - gi\|254702093\|ref\|ZP_05163921.1\| camphor resistance protein CrcB [Brucella suis bv. 5 str. 513] gi\|254708048 - gi\|254708048\|ref\|ZP_05169876.1\| camphor resistance protein CrcB [Brucella pinnipedialis M163/99/10] gi\|148370962, gi... - gi\|148559705\|ref\|YP_001259265.1\| camphor resistance protein CrcB [Brucella ovis ATCC 25840], gi\|1483... CRCB1_BRUAB - Protein crcB homolog 1 OS=Brucella abortus GN=crcB1 PE=3 SV=1 gi\|189024498, gi... - gi\|189024498\|ref\|YP_001935266.1\| CrcB family protein [Brucella abortus S19], gi\|189020070\|gb\|ACD7279...	91.0	[0..2]	[108..4]
CRCB2_BRUME - Putative fluoride ion transporter CrcB 2 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 /... gi\|225852852, gi... - gi\|225852852\|ref\|YP_002733085.1\| Camphor resistance protein CrcB [Brucella melitensis ATCC 23457], g... CRB2_BRUME, CRCB... - Protein crcB homolog 2 OS=Brucella melitensis GN=crcB2 PE=3 SV=1, (Q8YI11) Protein crcB homolog 2	90.0	[0..2]	[108..4]
CRCB1_BRADU - Putative fluoride ion transporter CrcB 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13... CRB1_BRAJA, CRCB... - Protein CrcB homolog 1 OS=Bradyrhizobium japonicum GN=crcB1 PE=3 SV=1, (Q89RX4) Protein crcB homolog...	90.0	[0..1]	[109..14]
gi\|218900224, gi... - gi\|218900224\|ref\|YP_002448635.1\| crcB protein [Bacillus cereus G9842], gi\|218540671\|gb\|ACK93065.1\| c... gi\|75760557, gi\|... - gi\|75760557\|ref\|ZP_00740591.1\| CrcB family protein [Bacillus thuringiensis serovar israelensis ATCC ... gi\|228791497, gi... - gi\|228968194\|ref\|ZP_04129194.1\| Protein crcB 1 [Bacillus thuringiensis serovar sotto str. T04001], g... gi\|228903577, gi... - gi\|228903577\|ref\|ZP_04067698.1\| Protein crcB 1 [Bacillus thuringiensis IBL 4222], gi\|228856006\|gb\|EE...	90.0	[0..1]	[109..11]
gi\|86750065, gi\|... - gi\|86750065\|ref\|YP_486561.1\| hypothetical protein RPB_2948 [Rhodopseudomonas palustris HaA2], gi\|865...	89.0	[0..2]	[109..19]
CRCB1_GEOKA - Putative fluoride ion transporter CrcB 1 OS=Geobacillus kaustophilus (strain HTA426) GN=crcB1 PE=3 S... CRCB1_GEOKA - Protein CrcB homolog 1 OS=Geobacillus kaustophilus GN=crcB1 PE=3 SV=1	88.0	[0..4]	[109..5]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIVYLAIAC GLGALVRYFF SRYNQASKLP LGTLIANLLG CFLIGVFYNH VESKEVYAIL  60
   61 ATGFCGGLTT FSTLNDELQR LLSDKKVFYS YLTLTYIGGL VAIFLGILL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.008774
Match:	PF02537.6
Description:	No description for PF02537.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.912	0.063	membrane	a.24.9	alpha-catenin/vinculin
View	Download	0.920	0.032	membrane	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.945	0.000	integral to membrane	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.942	0.000	integral to membrane	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.878	N/A	N/A	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits