YRC Public Data Repository - Protein Structure Prediction

Protein:	ZIPA_YERPP
Organism:	Yersinia pestis Pestoides F
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZIPA_YERPP.

Description	E-value	Query Range	Subject Range
gi\|21958273, gi\|... - gi\|22125388\|ref\|NP_668811.1\| cell division protein ZipA [Yersinia pestis KIM], gi\|21958273\|gb\|AAM850... gi\|45437256, gi\|... - gi\|45442392\|ref\|NP_993931.1\| cell division protein ZipA [Yersinia pestis biovar Microtus str. 91001]...	9.0E-84	[1..328]	[14..341]
gi\|77634536 - gi\|77634536\|ref\|ZP_00796634.1\| COG3115: Cell division protein [Yersinia pestis Angola] ZIPA_YERP3 - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=zipA PE... gi\|167421339, gi... - gi\|167421339\|ref\|ZP_02313092.1\| cell division protein ZipA [Yersinia pestis biovar Orientalis str. M... gi\|167056442, gi... - gi\|167424560\|ref\|ZP_02316313.1\| cell division protein ZipA [Yersinia pestis biovar Mediaevalis str. ... gi\|166011198, gi... - gi\|166011198\|ref\|ZP_02232096.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. E197... gi\|166212449, gi... - gi\|166212449\|ref\|ZP_02238484.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. B420...	4.0E-82	[2..328]	[1..327]
gi\|77979159 - gi\|77979159\|ref\|ZP_00834580.1\| COG3115: Cell division protein [Yersinia intermedia ATCC 29909]	3.0E-76	[1..328]	[1..327]
gi\|77960934 - gi\|77960934\|ref\|ZP_00824786.1\| COG3115: Cell division protein [Yersinia mollaretii ATCC 43969]	9.0E-73	[2..328]	[1..321]
gi\|238721076, gi... - gi\|77974568\|ref\|ZP_00830107.1\| COG3115: Cell division protein [Yersinia frederiksenii ATCC 33641], g...	5.0E-72	[1..328]	[1..327]
gi\|238785572, gi... - gi\|77956839\|ref\|ZP_00820915.1\| COG3115: Cell division protein [Yersinia bercovieri ATCC 43970], gi\|2...	6.0E-71	[1..328]	[1..322]
ZIPA_VIBPA - Cell division protein ZipA homolog OS=Vibrio parahaemolyticus GN=zipA PE=3 SV=1 ZIPA_VIBPA - Cell division protein ZipA OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=zipA P...	4.0E-69	[2..325]	[1..315]
ZIPA_VIBVY - Cell division protein ZipA OS=Vibrio vulnificus (strain YJ016) GN=zipA PE=3 SV=1	2.0E-68	[2..325]	[1..310]
ZIPA_VIBVU - Cell division protein ZipA OS=Vibrio vulnificus (strain CMCP6) GN=zipA PE=3 SV=1 ZIPA_VIBVU - Cell division protein ZipA homolog OS=Vibrio vulnificus GN=zipA PE=3 SV=1	5.0E-68	[2..325]	[1..310]
gi\|151937779, gi... - gi\|75853524\|ref\|ZP_00761353.1\| COG3115: Cell division protein [Vibrio sp. Ex25], gi\|254229734\|ref\|ZP...	2.0E-67	[2..325]	[1..317]

Back

Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQDLRLILI VVGAIAIIAL LLHGLWTSRK ERSSLFRDRP VKRTKQERVE TPIESLDEGV  60
   61 GEVRVRTSHP QEKPSFNHLD DDDDEVPVIQ HAETKSAQVK TASRQAPFAS VQTDYDDPLL 120
  121 GGLSAEQPPH DLSRDPLLGK ADESYSQPQH AEPPHVEKPA HQVAPQQHVE SQQEPV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [177-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAPEAKPQK LKETVLVLHV AAHHGGVIGG EVLLQSVLQS GFQFGEMGIF HRHLSPAGSG  60
   61 PVLFSLANMV KPGSFDPDTM SDFSTPGVSM FMMVPSYGDA NQNFKLMLQS AQRIADDVGG 120
  121 VVLDDERRMM TPQKLESYKA RIREVLDANT IA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	1y2gA
Description:	Crystal STructure of ZipA in complex with an inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits