YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254291829, gi...
Organism:	Vibrio cholerae AM-19226
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254291829, gi....

Description	E-value	Query Range	Subject Range
gi\|194537307, gi... - gi\|75820016\|ref\|ZP_00750074.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [V...	251.0	[0..1]	[260..1]
UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain CMCP6) GN=... UBIE_VIBVY - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain YJ016) GN=... UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Vibrio vulnificus GN=ubiE PE=3 SV=1	247.0	[0..1]	[260..1]
gi\|149746384, gi... - gi\|153840045\|ref\|ZP_01992712.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Vibrio p... UBIE_VIBPA - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio parahaemolyticus serotype O3:... UBIE_VIBPA - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Vibrio parahaemolyticus GN=ubiE PE=3 S...	244.0	[0..1]	[260..1]
gi\|91224931, gi\|... - gi\|91224931\|ref\|ZP_01260190.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio alginol...	243.0	[0..1]	[260..1]
gi\|116185709, gi... - gi\|75856470\|ref\|ZP_00764098.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [V...	243.0	[0..1]	[260..1]
gi\|84386296, gi\|... - gi\|84386296\|ref\|ZP_00989324.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio splendi...	242.0	[0..1]	[260..1]
gi\|218321183, gi... - gi\|218708164\|ref\|YP_002415785.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio splen... gi\|85835662, gi\|... - gi\|86146605\|ref\|ZP_01064927.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio sp. MED...	242.0	[0..1]	[260..1]
gi\|88774123, gi\|... - gi\|88794590\|ref\|ZP_01110297.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Alteromonas ma...	236.0	[0..1]	[260..1]
UBIE_PASMU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pasteurella multocida GN=ubiE PE=3 SV=... UBIE_PASMU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pasteurella multocida (strain Pm70) ...	233.0	[0..1]	[260..1]
gi\|89074430, gi\|... - gi\|89074430\|ref\|ZP_01160907.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Photobacterium...	233.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTNVLANS ATDNQETTHF GFETVRKDEK VHKVAQVFHS VAAKYDIMND LMSGGIHRLW  60
   61 KRFTIDCSGA RPGQRILDLG GGTGDLTAKF SRIVGEKGHV ILADINNSML NVGRDKLRDS 120
  121 GVVGNVHYVQ ANAEELPFPD NYFDCITISF CLRNVTDKDK ALRSMFRVLK PGGRLLVLEF 180
  181 SKPILEPLSK LYDTYSFHIL PKMGQLIAND ADSYRYLAES IRMHPDQETL KGMMEEAGFE 240
  241 QTTYYNLTGG IVALHRGYKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1im8A
Description:	Hypothetical protein HI0319 (YecO)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
oxidoreductase activity	0.964067575431689	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: