YRC Public Data Repository - Protein Structure Prediction

Protein:	GATD_ECOLI
Organism:	Escherichia coli
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90325090, gi\|... - gi\|90413906\|ref\|ZP_01221892.1\| putative alcohol dehydrogenase class III [Photobacterium profundum 3T...	325.0	[0..2]	[343..9]
gi\|54308673, gi\|... - gi\|54308673\|ref\|YP_129693.1\| putative alcohol dehydrogenase class III [Photobacterium profundum SS9]...	325.0	[0..2]	[343..9]
gi\|238715026, gi... - gi\|77958654\|ref\|ZP_00822684.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia ber...	325.0	[0..2]	[343..7]
gi\|238727202, gi... - gi\|77978816\|ref\|ZP_00834240.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia int...	325.0	[0..2]	[343..7]
gi\|113884808, gi... - gi\|82496301\|ref\|ZP_00881870.1\| alcohol dehydrogenase class III [Shewanella sp. MR-4], gi\|82405657\|gb... gi\|78685011, gi\|... - gi\|78685011\|ref\|ZP_00849792.1\| alcohol dehydrogenase class III [Shewanella sp. ANA-3], gi\|78507235\|g... gi\|78510849, gi\|... - gi\|78689689\|ref\|ZP_00854347.1\| alcohol dehydrogenase class III [Shewanella sp. MR-7], gi\|78510849\|gb...	323.0	[0..2]	[343..12]
gi\|160861160, gi... - gi\|160875638\|ref\|YP_001554954.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... gi\|68542288, gi\|... - gi\|68542288\|ref\|ZP_00582021.1\| Zinc-containing alcohol dehydrogenase superfamily [Shewanella baltica... gi\|77816052, gi\|... - gi\|77816052\|ref\|ZP_00815261.1\| Zinc-containing alcohol dehydrogenase superfamily [Shewanella putrefa... gi\|153000927, gi... - gi\|153000927\|ref\|YP_001366608.1\| S-(hydroxymethyl)glutathione dehydrogenase [Shewanella baltica OS18... gi\|146863790, gi... - gi\|217973117\|ref\|YP_002357868.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr...	323.0	[0..2]	[343..12]
gi\|238788842, gi... - gi\|77973854\|ref\|ZP_00829398.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia fre...	323.0	[0..2]	[343..7]
gi\|37197767, gi\|... - gi\|37679025\|ref\|NP_933634.1\| Zn-dependent alcohol dehydrogenase, class III [Vibrio vulnificus YJ016]...	323.0	[0..2]	[343..10]
gi\|166211733, gi... - gi\|166211733\|ref\|ZP_02237768.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydro... gi\|170024796, gi... - gi\|170024796\|ref\|YP_001721301.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... gi\|229703701, gi... - gi\|229894303\|ref\|ZP_04509486.1\| Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde d... gi\|186894941, gi... - gi\|186894941\|ref\|YP_001872053.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... Q66C89\|Q66C89_YERPS - Probable alcohol dehydrogenase / formaldehyde dehydrogenase - Yersinia pseudotuberculosis gi\|162351589, gi... - gi\|77635264\|ref\|ZP_00797351.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia pes... gi\|153947808, gi... - gi\|77628736\|ref\|ZP_00791322.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia pse... gi\|51595854, gi\|... - gi\|51595854\|ref\|YP_070045.1\| alcohol dehydrogenase/formaldehyde dehydrogenase [Yersinia pseudotuberc... gi\|145598759, gi... - gi\|145598759\|ref\|YP_001162835.1\| alcohol dehydrogenase [Yersinia pestis Pestoides F], gi\|145210455\|g... gi\|45436077, gi\|... - gi\|45441217\|ref\|NP_992756.1\| alcohol dehydrogenase [Yersinia pestis biovar Microtus str. 91001], gi\|...	323.0	[0..2]	[343..7]
gi\|83845254, gi\|... - gi\|83944007\|ref\|ZP_00956464.1\| zinc-binding dehydrogenase [Sulfitobacter sp. EE-36], gi\|83845254\|gb\|...	322.0	[0..2]	[343..8]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVVNDTDG IVRVAESVIP EIKHQDEVRV KIASSGLCGS DLPRIFKNGA HYYPITLGHE  60
   61 FSGYIDAVGS GVDDLHPGDA VACVPLLPCF TCPECLKGFY SQCAKYDFIG SRRDGGFAEY 120
  121 IVVKRKNVFA LPTDMPIEDG AFIEPITVGL HAFHLAQGCE NKNVIIIGAG TIGLLAIQCA 180
  181 VALGAKSVTA IDISSEKLAL AKSFGAMQTF NSSEMSAPQM QSVLRELRFN QLILETAGVP 240
  241 QTVELAVEIA GPHAQLALVG TLHQDLHLTS ATFGKILRKE LTVIGSWMNY SSPWPGQEWE 300
  301 TASRLLTERK LSLEPLIAHR GSFESFAQAV RDIARNAMPG KVLLIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.09691
Match:	2dfvA
Description:	No description for 2dfvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits