YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145844830, gi...
Organism:	Campylobacter jejuni subsp. jejuni CG8486
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145844830, gi....

Description	E-value	Query Range	Subject Range
gi\|57166323, gi\|... - gi\|57237519\|ref\|YP_178533.1\| hypothetical protein CJE0515 [Campylobacter jejuni RM1221], gi\|57166323...	141.0	[0..1]	[127..1]
gi\|87304572, gi\|... - gi\|87304572\|ref\|ZP_01086728.1\| sec-independent protein translocase protein tatc [Campylobacter jejun...	141.0	[0..1]	[127..1]
gi\|86151811, gi\|... - gi\|86151811\|ref\|ZP_01070025.1\| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 26...	141.0	[0..1]	[127..1]
gi\|85842898, gi\|... - gi\|86153937\|ref\|ZP_01072140.1\| sec-independent protein translocase protein tatc [Campylobacter jejun...	141.0	[0..1]	[127..1]
gi\|109691610, gi... - gi\|153952285\|ref\|YP_001398498.1\| hypothetical protein JJD26997_1475 [Campylobacter jejuni subsp. doy...	140.0	[0..1]	[127..1]
gi\|25349467 - pir\|\|F84006 hypothetical protein BH2854 [imported] - Bacillus halodurans (strain C-125) gi\|15615417, gi\|... - gi\|15615417\|ref\|NP_243720.1\| hypothetical protein BH2854 [Bacillus halodurans C-125], gi\|10175475\|db...	137.0	[0..3]	[125..9]
gi\|13774099 - gi\|13774099\|gb\|AAK38159.1\| putative globin [Burkholderia pseudomallei]	137.0	[0..2]	[121..48]
gi\|76578613, gi\|... - gi\|76809160\|ref\|YP_332811.1\| hypothetical protein BURPS1710b_1401 [Burkholderia pseudomallei 1710b],... gi\|53718816, gi\|... - gi\|53718816\|ref\|YP_107802.1\| putative globin [Burkholderia pseudomallei K96243], gi\|52209230\|emb\|CAH... gi\|242138028, gi... - gi\|242314789\|ref\|ZP_04813805.1\| protozoan/cyanobacterial globin family protein [Burkholderia pseudom... gi\|217419997, gi... - gi\|217419997\|ref\|ZP_03451503.1\| protozoan/cyanobacterial globin family protein [Burkholderia pseudom...	136.0	[0..2]	[121..26]
gi\|53725407, gi\|... - gi\|53725407\|ref\|YP_103467.1\| hypothetical protein BMA1867 [Burkholderia mallei ATCC 23344], gi\|52428...	136.0	[0..2]	[121..26]
gi\|83652795, gi\|... - gi\|83718970\|ref\|YP_441584.1\| hypothetical protein BTH_I1030 [Burkholderia thailandensis E264], gi\|83...	136.0	[0..2]	[121..42]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFETINQES IAKLMEIFYE KVRKDKDLGP IFNNAIGTSD EEWKEHKAKI GNFWAGMLLG  60
   61 EGDYNGQPLK KHLDLPPFPQ EFFEIWLKLF EESLNIVYNE EMKNVILQRA QMIASHFQNM 120
  121 LYKYGGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2ig3A
Description:	No description for 2ig3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits