YRC Public Data Repository - Protein Structure Prediction

Protein:	PYRD_YERPP
Organism:	Yersinia pestis Pestoides F
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRD_YERPP.

Description	E-value	Query Range	Subject Range
gi\|94492053, gi\|... - gi\|94492053\|ref\|ZP_01299262.1\| hypothetical protein CburD_01000943 [Coxiella burnetii Dugway 7E9-12]... PYRD_COXBU - Dihydroorotate dehydrogenase (quinone) OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=... PYRD_COXBU - Dihydroorotate dehydrogenase (quinone) OS=Coxiella burnetii GN=pyrD PE=3 SV=1 PYRD_COXBR - Dihydroorotate dehydrogenase (quinone) OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=pyrD... PYRD_COXBN - Dihydroorotate dehydrogenase (quinone) OS=Coxiella burnetii (strain Dugway 5J108-111) GN=pyrD PE=3 S... gi\|120577163, gi... - gi\|153206800\|ref\|ZP_01945641.1\| dihydroorotate oxidase [Coxiella burnetii 'MSU Goat Q177'], gi\|12057... PYRD_COXB1 - Dihydroorotate dehydrogenase (quinone) OS=Coxiella burnetii (strain CbuK_Q154) GN=pyrD PE=3 SV=1 PYRD_COXB2 - Dihydroorotate dehydrogenase (quinone) OS=Coxiella burnetii (strain CbuG_Q212) GN=pyrD PE=3 SV=1 gi\|165918575, gi... - gi\|165918575\|ref\|ZP_02218661.1\| dihydroorotate oxidase [Coxiella burnetii RSA 334], gi\|165917703\|gb\|...	1.0E-72	[1..336]	[1..336]
PYRD_COLP3 - Dihydroorotate dehydrogenase (quinone) OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=p...	8.0E-72	[1..336]	[1..336]
PYRD_PSYWF - Dihydroorotate dehydrogenase (quinone) OS=Psychrobacter sp. (strain PRwf-1) GN=pyrD PE=3 SV=1	4.0E-71	[1..336]	[1..335]
PYRD_VIBPA - Dihydroorotate dehydrogenase (quinone) OS=Vibrio parahaemolyticus GN=pyrD PE=3 SV=1 gi\|149747126, gi... - gi\|153839355\|ref\|ZP_01992022.1\| dihydroorotate oxidase [Vibrio parahaemolyticus AQ3810], gi\|14974712... PYRD_VIBPA - Dihydroorotate dehydrogenase (quinone) OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221063...	4.0E-71	[1..336]	[1..336]
gi\|151937080, gi... - gi\|75854396\|ref\|ZP_00762092.1\| COG0167: Dihydroorotate dehydrogenase [Vibrio sp. Ex25], gi\|254230399...	5.0E-71	[1..336]	[1..336]
gi\|90328567, gi\|... - gi\|90410326\|ref\|ZP_01218342.1\| dihydroorotate dehydrogenase [Photobacterium profundum 3TCK], gi\|9032...	6.0E-71	[1..333]	[1..333]
gi\|238795877, gi... - gi\|77963117\|ref\|ZP_00826930.1\| COG0167: Dihydroorotate dehydrogenase [Yersinia mollaretii ATCC 43969...	6.0E-71	[1..336]	[1..336]
gi\|77979210, gi\|... - gi\|77979210\|ref\|ZP_00834630.1\| COG0167: Dihydroorotate dehydrogenase [Yersinia intermedia ATCC 29909...	7.0E-71	[1..336]	[1..336]
gi\|238713134, gi... - gi\|77956749\|ref\|ZP_00820829.1\| COG0167: Dihydroorotate dehydrogenase [Yersinia bercovieri ATCC 43970...	7.0E-71	[1..336]	[1..336]
gi\|229520527, gi... - gi\|229520527\|ref\|ZP_04409951.1\| dihydroorotate dehydrogenase [Vibrio cholerae TM 11079-80], gi\|22934... gi\|229347604, gi... - gi\|229514899\|ref\|ZP_04404359.1\| dihydroorotate dehydrogenase [Vibrio cholerae TMA 21], gi\|229347604\|... gi\|229333241, gi... - gi\|229529467\|ref\|ZP_04418857.1\| dihydroorotate dehydrogenase [Vibrio cholerae 12129(1)], gi\|22933324... gi\|153216383, gi... - gi\|153216383\|ref\|ZP_01950434.1\| dihydroorotate dehydrogenase [Vibrio cholerae 1587], gi\|124114294\|gb... gi\|125620804, gi... - gi\|75819557\|ref\|ZP_00749631.1\| COG0167: Dihydroorotate dehydrogenase [Vibrio cholerae V51], gi\|25422... gi\|116216545, gi... - gi\|75823387\|ref\|ZP_00752892.1\| COG0167: Dihydroorotate dehydrogenase [Vibrio cholerae RC385], gi\|254... tr\|D7H8V7\|D7H8V7... - Dihydroorotate dehydrogenase (quinone) OS=Vibrio cholerae RC385 GN=pyrD PE=3 SV=1 gi\|254286078, gi... - gi\|254286078\|ref\|ZP_04961038.1\| dihydroorotate dehydrogenase [Vibrio cholerae AM-19226], gi\|19775232... gi\|153831049, gi... - gi\|153831049\|ref\|ZP_01983716.1\| dihydroorotate dehydrogenase [Vibrio cholerae 623-39], gi\|148873469\|...	9.0E-71	[1..336]	[1..336]

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Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYPLVRKAL FQLDPERAHE LTFRQLKRVS GTPLEFLVRQ SVPTKPVSCM GLSFKNPVGL  60
   61 AAGLDKDGEC IDALGAMGFG FIEVGTVTPR PQVGNDKPRL FRIVEAEGLI NRMGFNNHGV 120
  121 DNLIENVKKS HFGGILGINI GKNKDTPVEQ GKEDYLICMD KIYPYAGYIA INISSPNTPG 180
  181 LRSLQYGEAL DDLLAAIKDK QTELHQRHHK YVPVAVKIAP DLTEEELIQI ADSLVRHNID 240
  241 GVIATNTTLD RSLIQGLNYC EQAGGLSGRP LQLRSTEVIH RLSQELKGRL PIIGVGGIDS 300
  301 VTAAREKMAA GASLIQIYSG FIFRGPGLIK NIVTHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1f76A
Description:	Dihydroorotate dehydrogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits