YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149289284, gi...
Organism:	Yersinia pestis CA88-4125
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149289284, gi....

Description	E-value	Query Range	Subject Range
RECX_YERPS - Regulatory protein RecX OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=recX PE=3 SV=1 RECX_YERP3 - Regulatory protein RecX OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=recX PE=3 ... RECX_YERPS - Regulatory protein recX OS=Yersinia pseudotuberculosis GN=recX PE=3 SV=1 gi\|186697215, gi... - gi\|186894189\|ref\|YP_001871301.1\| recombination regulator RecX [Yersinia pseudotuberculosis PB1/+], g...	3.0E-40	[1..187]	[1..182]
gi\|58582563, gi\|... - gi\|58582563\|ref\|YP_201579.1\| recombination regulator RecX [Xanthomonas oryzae pv. oryzae KACC10331],...	3.0E-36	[29..187]	[16..174]
RECX_PSE14 - Regulatory protein RecX OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=recX P...	1.0E-35	[40..184]	[6..150]
gi\|125973564, gi... - gi\|67874462\|ref\|ZP_00504248.1\| Regulatory protein RecX [Clostridium thermocellum ATCC 27405], gi\|678... gi\|196254031, gi... - gi\|196254031\|ref\|ZP_03152624.1\| regulatory protein RecX [Clostridium thermocellum DSM 4150], gi\|1961...	2.0E-35	[12..183]	[28..200]
RECX_VIBVY - Regulatory protein RecX OS=Vibrio vulnificus (strain YJ016) GN=recX PE=3 SV=1	2.0E-35	[45..184]	[12..151]
RECX_VIBVU - Regulatory protein recX OS=Vibrio vulnificus GN=recX PE=3 SV=1 RECX_VIBVU - Regulatory protein RecX OS=Vibrio vulnificus (strain CMCP6) GN=recX PE=3 SV=1	3.0E-35	[44..185]	[11..152]
RECX_PSEU2 - Regulatory protein RecX OS=Pseudomonas syringae pv. syringae (strain B728a) GN=recX PE=3 SV=1	3.0E-35	[40..184]	[6..150]
gi\|161723248 - gi\|161723248\|ref\|YP_095826.2\| recombination regulator RecX [Legionella pneumophila subsp. pneumophil... RECX_LEGPN - Regulatory protein RecX OS=Legionella pneumophila GN=recX PE=3 SV=2 RECX_LEGPC - Regulatory protein RecX OS=Legionella pneumophila (strain Corby) GN=recX PE=3 SV=1 RECX_LEGPA - Regulatory protein RecX OS=Legionella pneumophila (strain Paris) GN=recX PE=3 SV=1	3.0E-35	[44..184]	[3..143]
RECX_PASMU - Regulatory protein recX OS=Pasteurella multocida GN=recX PE=3 SV=2 RECX_PASMU - Regulatory protein RecX OS=Pasteurella multocida (strain Pm70) GN=recX PE=3 SV=2	4.0E-35	[33..186]	[6..161]
RECX_LEGPL - Regulatory protein RecX OS=Legionella pneumophila (strain Lens) GN=recX PE=3 SV=1	4.0E-35	[44..184]	[3..143]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDQLSRAMR LLSQRDHSES ELRRKLAAPP FSAKGNWGKR SGAKSSDVVE SNLVESNPVE  60
   61 SNLAESNAIE ESDPQVIEQV IDYCYQHNWL DDSRFAASYI NSRSRKGYGV QRIRSELMQK 120
  121 GVDKERILAA FENSEIDWCQ LAKEVAQRKF SETLPVEWKE KAKVQRYLLY RGFFQEEIQS 180
  181 IYTDSVE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.853872
Match:	PF02631.7
Description:	No description for PF02631.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits