YRC Public Data Repository - Protein Structure Prediction

Protein:	TDH_YERPP
Organism:	Yersinia pestis Pestoides F
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDH_YERPP.

Description	E-value	Query Range	Subject Range
gi\|40795502 - gi\|40795502\|gb\|AAR91477.1\| thermostable alcohol dehydrogenase [Geobacillus sp. M10EXG]	6.0E-97	[1..341]	[1..337]
ADH3_GEOSE - Alcohol dehydrogenase OS=Geobacillus stearothermophilus PE=1 SV=1	4.0E-96	[1..341]	[1..337]
gi\|56419266, gi\|... - gi\|56419266\|ref\|YP_146584.1\| alcohol dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56379108\|db...	8.0E-94	[1..340]	[1..336]
gi\|238715026, gi... - gi\|77958654\|ref\|ZP_00822684.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia ber...	2.0E-93	[2..341]	[7..373]
gi\|56961828, gi\|... - gi\|56961828\|ref\|YP_173550.1\| alcohol dehydrogenase [Bacillus clausii KSM-K16], gi\|56908062\|dbj\|BAD62...	2.0E-93	[1..341]	[10..346]
gi\|238727202, gi... - gi\|77978816\|ref\|ZP_00834240.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia int...	2.0E-93	[2..341]	[7..373]
gi\|160861160, gi... - gi\|160875638\|ref\|YP_001554954.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr... gi\|68542288, gi\|... - gi\|68542288\|ref\|ZP_00582021.1\| Zinc-containing alcohol dehydrogenase superfamily [Shewanella baltica... gi\|77816052, gi\|... - gi\|77816052\|ref\|ZP_00815261.1\| Zinc-containing alcohol dehydrogenase superfamily [Shewanella putrefa... gi\|153000927, gi... - gi\|153000927\|ref\|YP_001366608.1\| S-(hydroxymethyl)glutathione dehydrogenase [Shewanella baltica OS18... gi\|146863790, gi... - gi\|217973117\|ref\|YP_002357868.1\| S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydr...	4.0E-93	[2..341]	[12..378]
gi\|83845254, gi\|... - gi\|83944007\|ref\|ZP_00956464.1\| zinc-binding dehydrogenase [Sulfitobacter sp. EE-36], gi\|83845254\|gb\|...	6.0E-93	[2..340]	[8..373]
gi\|90325090, gi\|... - gi\|90413906\|ref\|ZP_01221892.1\| putative alcohol dehydrogenase class III [Photobacterium profundum 3T...	1.0E-92	[2..341]	[9..375]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALSKLKAE EGIWMTDVPQ PELGHNDIMI KIRKTAICGT DVHIYNWDEW SQKTIPVPMV  60
   61 VGHEYVGEVV AIGQEVKGFN IGDRVSGEGH ITCGHCRNCR GGRTHLCRNT VGVGVNRPGS 120
  121 FAEYLVIPAF NAFKIPDNIS DELAAIFDPF GNAVHTALSF DLVGEDVLVS GAGPIGIMAA 180
  181 AVCKHVGARH VVIADVNEYR LDLARKMGVT RAVNVSKENL NDVMTELGMT EGFDVGLEMS 240
  241 GAPPAFRSLL NSMNHGGRIA MLGIPPSDMS IDWNQVIFKG LFIKGIYGRE MFETWYKMAA 300
  301 LIQSGLDLTP IITHRFPIDE FQQGFDAMRS GKSGKVVLSW D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	2d8aA
Description:	No description for 2d8aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits