YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197751937, gi...
Organism:	Vibrio cholerae AM-19226
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197751937, gi....

Description	E-value	Query Range	Subject Range
gi\|115364038, gi... - gi\|115378962\|ref\|ZP_01466095.1\| 6-pyruvoyl tetrahydropterin synthase family [Stigmatella aurantiaca ...	181.0	[0..6]	[122..657]
gi\|26109570, gi\|... - gi\|26249163\|ref\|NP_755203.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli CFT0... gi\|91073700, gi\|... - gi\|91212126\|ref\|YP_542112.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli UTI8... gi\|237706612, gi... - gi\|237706612\|ref\|ZP_04537093.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	177.0	[0..1]	[122..28]
gi\|9948737, gi\|1... - gi\|9948737\|gb\|AAG06054.1\|AE004695_7 probable 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas ae... gi\|152989185, gi... - gi\|94412899\|ref\|ZP_01292797.1\| hypothetical protein PaerP_01005313 [Pseudomonas aeruginosa PA7], gi\|... gi\|107102187 - gi\|107102187\|ref\|ZP_01366105.1\| hypothetical protein PaerPA_01003238 [Pseudomonas aeruginosa PACS2] gi\|11350848 - pir\|\|H83311 probable 6-pyruvoyl tetrahydrobiopterin synthase PA2666 [imported] - Pseudomonas aerugin... gi\|116050653, gi... - gi\|32037704\|ref\|ZP_00135976.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|194546633, gi... - gi\|84320636\|ref\|ZP_00969009.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|218771397, gi... - gi\|218891172\|ref\|YP_002440038.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas aerug... gi\|84326995, gi\|... - gi\|84326995\|ref\|ZP_00975019.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa...	177.0	[0..5]	[122..1]
gi\|110616159, gi... - gi\|110806611\|ref\|YP_690131.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 5 ... gi\|254037814, gi... - gi\|254037814\|ref\|ZP_04871872.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683943... gi\|24053178, gi\|... - ref\|NP_708563.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 2a str. 301], ...	177.0	[0..1]	[122..28]
gi\|85058493, gi\|... - gi\|85058493\|ref\|YP_454195.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Sodalis glossinidius ...	177.0	[0..3]	[122..1]
gi\|71557763, gi\|... - gi\|71737210\|ref\|YP_275300.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Pseudomonas syringae...	176.0	[0..5]	[122..1]
gi\|104781054, gi... - gi\|95110041\|emb\|CAK14746.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase SscR [Pseudomonas entom... gi\|95110041 - gi\|95110041\|emb\|CAK14746.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase SscR [Pseudomonas entom...	175.0	[0..5]	[122..1]
gi\|46187340, gi\|... - gi\|66046444\|ref\|YP_236285.1\| putative 6-pyruvoyl tetrahydropterin synthase [Pseudomonas syringae pv....	174.0	[0..5]	[122..1]
gi\|195633519, gi... - gi\|195633519\|gb\|EDX51933.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|205349073, gi... - gi\|205349073\|gb\|EDZ35704.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|205337963, gi... - gi\|205337963\|gb\|EDZ24727.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp. ente... gi\|197290790, gi... - gi\|197290790\|gb\|EDY30144.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|194472851, gi... - gi\|194472851\|ref\|ZP_03078835.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|194449237, gi... - gi\|194449237\|ref\|YP_002046907.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ent... gi\|194445925, gi... - gi\|194445925\|ref\|YP_002042191.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp.... gi\|168820343, gi... - gi\|205342824\|gb\|EDZ29588.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp. ente... gi\|168231030, gi... - gi\|205334410\|gb\|EDZ21174.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp. ente... gi\|167993193, gi... - gi\|205328718\|gb\|EDZ15482.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica su... gi\|205324819, gi... - gi\|205324819\|gb\|EDZ12658.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|160863344, gi... - gi\|161501997\|ref\|YP_001569109.1\| hypothetical protein SARI_00013 [Salmonella enterica subsp. arizona... gi\|213422336 - gi\|213422336\|ref\|ZP_03355402.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213163459 - gi\|213163459\|ref\|ZP_03349169.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213022665 - gi\|213022665\|ref\|ZP_03337112.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... lcl\|NC_016856.1_... - [gene=ptpS] [protein=putative 6-pyruvoyl tetrahydrobiopterin synthase] [protein_id=YP_005239063.1] [... gi\|207858209, gi... - gi\|207858209\|ref\|YP_002244860.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|213648293 - gi\|213648293\|ref\|ZP_03378346.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213615974 - gi\|213615974\|ref\|ZP_03371800.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213581715 - gi\|213581715\|ref\|ZP_03363541.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213424927 - gi\|213424927\|ref\|ZP_03357677.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|16766255, gi\|... - gi\|16766255\|ref\|NP_461870.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella typhimuriu... gi\|62129083, gi\|... - gi\|62181450\|ref\|YP_217867.1\| putative synthase [Salmonella enterica subsp. enterica serovar Cholerae... gi\|197363822, gi... - gi\|197363822\|ref\|YP_002143459.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|29143205, gi\|... - gi\|29143205\|ref\|NP_806547.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica s... gi\|56129151, gi\|... - gi\|56414894\|ref\|YP_151969.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica s... gi\|197263107, gi... - gi\|197263107\|ref\|ZP_03163181.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|197211080, gi... - gi\|197247377\|ref\|YP_002147848.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ent... gi\|16504022, gi\|... - gi\|25321857\|pir\|\|AH0858 probable 6-pyruvoyltetrahydropterin synthase (EC 4.2.3.12) [imported] - Salm... gi\|194738118, gi... - gi\|194738118\|ref\|YP_002115898.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ent... gi\|205353889, gi... - gi\|205353889\|ref\|YP_002227690.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|204928214, gi... - gi\|204928214\|ref\|ZP_03219414.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|238909721 - gi\|238909721\|ref\|ZP_04653558.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|16761721 - gi\|16761721\|ref\|NP_457338.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica s... gi\|200388847, gi... - gi\|200388847\|ref\|ZP_03215459.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|197939059, gi... - gi\|198244543\|ref\|YP_002216916.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp.... gi\|224469255, gi... - gi\|224584728\|ref\|YP_002638526.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|214003254 - gi\|214003254\|ref\|ZP_03413989.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213852989 - gi\|213852989\|ref\|ZP_03382521.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric...	174.0	[0..3]	[122..1]
gi\|75241852 - gi\|75241852\|ref\|ZP_00725671.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli F11] gi\|117624992, gi... - gi\|117624992\|ref\|YP_853980.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli APEC ... gi\|215266150, gi... - gi\|215488078\|ref\|YP_002330509.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli O1... gi\|218366520, gi... - gi\|218559751\|ref\|YP_002392664.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli S8... gi\|218690885, gi... - gi\|218690885\|ref\|YP_002399097.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli ED... gi\|227834570, gi... - gi\|227888301\|ref\|ZP_04006106.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli 83972], gi... gi\|110642899, gi... - gi\|110642899\|ref\|YP_670629.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli 536...	174.0	[0..2]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKTELYKE FMFEAAHHLP HVPAGHKCGR LHGHSFLVRL YVEGEVDPHT GWVVDFAEIK  60
   61 AAFKPIYDRL DHYYLNDIEG LENPTSEVLA KWIWQQLKPS LPLLSKVEIK ETCTAGCIYR 120
  121 GE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	2obaA
Description:	No description for 2obaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits