YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148875171, gi...
Organism:	Vibrio cholerae 623-39
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148875171, gi....

Description	E-value	Query Range	Subject Range
gi\|85836109, gi\|... - gi\|86146162\|ref\|ZP_01064488.1\| polar flagellar FlgM [Vibrio sp. MED222], gi\|85836109\|gb\|EAQ54241.1\| ...	96.0	[0..1]	[107..18]
gi\|89075487, gi\|... - gi\|89075487\|ref\|ZP_01161898.1\| putative negative regulator of flagellin synthesis FlgM [Photobacteri...	93.0	[0..1]	[107..1]
gi\|37679140, gi\|... - gi\|37679140\|ref\|NP_933749.1\| negative regulator FlgM of flagellin synthesis [Vibrio vulnificus YJ016... gi\|27359828, gi\|... - gi\|27363712\|ref\|NP_759240.1\| anti-sigma28 factor [Vibrio vulnificus CMCP6], gi\|27359828\|gb\|AAO08767....	92.0	[0..1]	[105..1]
gi\|90438786, gi\|... - gi\|90579901\|ref\|ZP_01235709.1\| putative negative regulator of flagellin synthesis FlgM [Vibrio angus...	92.0	[0..1]	[107..1]
gi\|84377151, gi\|... - gi\|84388084\|ref\|ZP_00990980.1\| polar flagellar FlgM [Vibrio splendidus 12B01], gi\|84377151\|gb\|EAP940...	91.0	[0..1]	[107..1]
gi\|54308090, gi\|... - gi\|54308090\|ref\|YP_129110.1\| putative negative regulator of flagellin synthesis FlgM [Photobacterium...	89.0	[0..1]	[107..1]
gi\|90328211, gi\|... - gi\|90410998\|ref\|ZP_01219012.1\| putative negative regulator of flagellin synthesis FlgM [Photobacteri...	88.0	[0..1]	[107..1]
gi\|116051366, gi... - gi\|32038451\|ref\|ZP_00136723.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	88.0	[0..5]	[103..6]
gi\|254236313, gi... - gi\|84319934\|ref\|ZP_00968321.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|126195416, gi... - gi\|84326004\|ref\|ZP_00974035.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|218770676, gi... - gi\|218890453\|ref\|YP_002439317.1\| FlgM [Pseudomonas aeruginosa LESB58], gi\|218770676\|emb\|CAW26441.1\| ... gi\|107102883 - gi\|107102883\|ref\|ZP_01366801.1\| hypothetical protein PaerPA_01003951 [Pseudomonas aeruginosa PACS2] gi\|11349881, gi\|... - gi\|14581461\|gb\|AAK31636.1\| FlgM [Pseudomonas aeruginosa], pir\|\|D83227 hypothetical protein PA3351 [i... gi\|15598547, gi\|... - gi\|9949484\|gb\|AAG06739.1\|AE004757_8 FlgM [Pseudomonas aeruginosa PAO1], gi\|15598547\|ref\|NP_252041.1\|...	86.0	[0..5]	[103..6]
gi\|152984507, gi... - gi\|94413583\|ref\|ZP_01293462.1\| hypothetical protein PaerP_01004599 [Pseudomonas aeruginosa PA7], gi\|...	86.0	[0..5]	[103..6]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIDNIRAG QSLNTTSRTN VRSSDASNSS TQSGAVSRSS ASGQDAVSLS SQSKAIGEMH  60
   61 SEMASRPSFD SAKVAAIKEA IANGSYVVDP EKLADNMIKF EKELGGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits