YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148985451, gi...
Organism:	Streptococcus pneumoniae SP3-BS71
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148985451, gi....

Description	E-value	Query Range	Subject Range
gi\|71904535, gi\|... - gi\|71904535\|ref\|YP_281338.1\| L-serine dehydratase [Streptococcus pyogenes MGAS6180], gi\|71803630\|gb\|...	230.0	[0..1]	[221..3]
gi\|19749280, gi\|... - gi\|19749280\|gb\|AAL98657.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS82... gi\|134272857, gi... - gi\|139474610\|ref\|YP_001129326.1\| putative L-serine dehydratase, beta chain [Streptococcus pyogenes s... gi\|28812003, gi\|... - gi\|28896749\|ref\|NP_803099.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes SSI-... gi\|21911377, gi\|... - gi\|21911377\|ref\|NP_665645.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS...	230.0	[0..1]	[221..1]
gi\|94995353, gi\|... - gi\|94995353\|ref\|YP_603451.1\| L-serinedehydratase beta subunit [Streptococcus pyogenes MGAS10750], gi... gi\|94991469, gi\|... - gi\|94991469\|ref\|YP_599569.1\| L-serinedehydratase beta subunit [Streptococcus pyogenes MGAS10270], gi... gi\|50904278, gi\|... - gi\|50915204\|ref\|YP_061176.1\| L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS10394], g...	229.0	[0..1]	[221..3]
gi\|56808668 - gi\|56808668\|ref\|ZP_00366392.1\| COG1760: L-serine deaminase [Streptococcus pyogenes M49 591]	229.0	[0..1]	[221..1]
gi\|94542990, gi\|... - gi\|94989482\|ref\|YP_597583.1\| L-serinedehydratase beta subunit [Streptococcus pyogenes MGAS9429], gi\|... gi\|94546877, gi\|... - gi\|94993369\|ref\|YP_601468.1\| L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS2096], gi...	228.0	[0..1]	[221..3]
gi\|71911654, gi\|... - gi\|71911654\|ref\|YP_283204.1\| L-serine dehydratase [Streptococcus pyogenes MGAS5005], gi\|71854436\|gb\|... gi\|15675923, gi\|... - gi\|15675923\|ref\|NP_270097.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes M1 G...	228.0	[0..1]	[221..1]
gi\|55739216, gi\|... - gb\|AAV62857.1\| L-serine dehydratase beta subunit [Streptococcus thermophilus CNRZ1066], gb\|AAV60946... gi\|55739216, gi\|... - gi\|55823231\|ref\|YP_141672.1\| L-serine dehydratase beta subunit [Streptococcus thermophilus CNRZ1066]... gi\|55737304, gi\|... - gi\|55821319\|ref\|YP_139761.1\| L-serine dehydratase beta subunit [Streptococcus thermophilus LMG 18311...	228.0	[0..1]	[221..15]
gi\|76562683, gi\|... - gi\|76787626\|ref\|YP_330693.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu... gi\|77160758, gi\|... - gi\|77413218\|ref\|ZP_00789416.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|77161464, gi\|... - gi\|77412488\|ref\|ZP_00788789.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|77408907, gi\|... - gi\|77408907\|ref\|ZP_00785632.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|25012139, gi\|... - gi\|25012139\|ref\|NP_736534.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu... gi\|77406512, gi\|... - gi\|77406512\|ref\|ZP_00783565.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|22538279, gi\|... - gi\|22538279\|ref\|NP_689130.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu... gi\|76585787, gi\|... - gi\|76798864\|ref\|ZP_00781073.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ...	226.0	[0..1]	[221..1]
gi\|62527623 - gi\|62527623\|ref\|ZP_00388895.1\| COG1760: L-serine deaminase [Streptococcus thermophilus LMD-9]	226.0	[0..1]	[221..15]
gi\|253754626, gi... - gi\|253754626\|ref\|YP_003027767.1\| L-serine dehydratase, beta chain [Streptococcus suis P1/7], gi\|2518... gi\|253752801, gi... - gi\|253752801\|ref\|YP_003025942.1\| putative L-serine dehydratase, beta chain [Streptococcus suis SC84]... gi\|253756559, gi... - gi\|253756559\|ref\|YP_003029699.1\| L-serine dehydratase, beta chain [Streptococcus suis BM407], gi\|251... gi\|80976287, gi\|... - gi\|81177007\|ref\|ZP_00875920.1\| Iron-sulfur-dependent L-serine dehydratase beta subunit [Streptococcu...	225.0	[0..1]	[221..1]

Back

Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLRFQSVF DIIGPVMIGP SSSHTAGAVR IGKIVSSIFD DTPTEVEFQL FNSFAKTYRG  60
   61 HGTDLALVAG ILGMDTDDPE IPNSLEIAHK RGIKIVWTIQ KDSNAPHPNT TKITVKNAHK 120
  121 TISVTGISIG GGNIQVTELN GFAVSLNMNT PTIIIVHQDI PGMIALVTEA LSRYGINIAQ 180
  181 MNVTREKAGE KAIMIIEVDS RNCDEAIEEI RKIPHLHNVN FFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.045757
Match:	1psdA
Description:	Phosphoglycerate dehydrogenase; Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	2.7207189033055	bayes_pls_golite062009
oxidoreductase activity	1.95477050413	bayes_pls_golite062009
acetolactate synthase activity	1.81856869558384	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.771153340292	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.66554302844944	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009
phosphoglycerate dehydrogenase activity	0.0511824933768104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: