YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153997335, gi...
Organism:	Yersinia pestis CA88-4125
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153997335, gi....

Description	E-value	Query Range	Subject Range
gi\|153949576, gi... - gi\|77630505\|ref\|ZP_00793091.1\| COG2969: Stringent starvation protein B [Yersinia pseudotuberculosis ...	2.0E-63	[1..171]	[1..171]
gi\|238789740, gi... - gi\|77973391\|ref\|ZP_00828939.1\| COG2969: Stringent starvation protein B [Yersinia frederiksenii ATCC ...	3.0E-61	[1..171]	[1..171]
gi\|77977068, gi\|... - gi\|77977068\|ref\|ZP_00832528.1\| COG2969: Stringent starvation protein B [Yersinia intermedia ATCC 299...	2.0E-60	[1..171]	[1..171]
gi\|77963496, gi\|... - gi\|77963496\|ref\|ZP_00827305.1\| COG2969: Stringent starvation protein B [Yersinia mollaretii ATCC 439...	2.0E-59	[1..171]	[1..169]
gi\|238714004, gi... - gi\|77957460\|ref\|ZP_00821515.1\| COG2969: Stringent starvation protein B [Yersinia bercovieri ATCC 439...	5.0E-59	[1..171]	[1..171]
gi\|90413024, gi\|... - gi\|90413024\|ref\|ZP_01221022.1\| putative stringent starvation protein B [Photobacterium profundum 3TC...	4.0E-58	[1..171]	[1..168]
gi\|27364054, gi\|... - gi\|27364054\|ref\|NP_759582.1\| ClpXP protease specificity-enhancing factor [Vibrio vulnificus CMCP6], ... gi\|37197525, gi\|... - gi\|37678784\|ref\|NP_933393.1\| ClpXP protease specificity-enhancing factor [Vibrio vulnificus YJ016], ...	1.0E-56	[1..171]	[1..158]
gi\|36787303, gi\|... - gi\|37527867\|ref\|NP_931212.1\| ClpXP protease specificity-enhancing factor [Photorhabdus luminescens s...	1.0E-56	[1..171]	[1..171]
gi\|89050121, gi\|... - gi\|89074185\|ref\|ZP_01160684.1\| putative stringent starvation protein B [Photobacterium sp. SKA34], g...	3.0E-54	[1..171]	[1..167]
gi\|28805428, gi\|... - gi\|28897219\|ref\|NP_796824.1\| ClpXP protease specificity-enhancing factor [Vibrio parahaemolyticus RI... gi\|28805428 - gi\|28805428\|dbj\|BAC58708.1\| stringent starvation protein B [Vibrio parahaemolyticus RIMD 2210633] gi\|149746046, gi... - gi\|153840294\|ref\|ZP_01992961.1\| stringent starvation protein B [Vibrio parahaemolyticus AQ3810], gi\|...	4.0E-54	[1..171]	[1..160]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMSDMSPRR PYLLRAFYEW LIDNQLTPHL VVDVTRPGVS VPMEFARDGQ IVLNVAPRAV  60
   61 GNLELSNDDV RFNARFGGVP RQVTVPIAAV MAIYARENGS GTMFEPEAAY DADADGNFEG 120
  121 IEGKENETAP TESLMLVTDD TRVEQDDDNS PDDKPPQPPR SGGRPALRVV K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.154902
Match:	1yfnA
Description:	Versatile modes of peptide recognition by the AAA+ adaptor protein SspB- the crystal structure of a SspB-RseA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.10198821505373	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: