YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145637255, gi...
Organism:	Haemophilus influenzae PittHH
Length:	56 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145637255, gi....

Description	E-value	Query Range	Subject Range
gi\|86163693, gi\|... - gi\|87120855\|ref\|ZP_01076747.1\| RpmG protein [Marinomonas sp. MED121], gi\|86163693\|gb\|EAQ64966.1\| Rpm...	82.0	[0..1]	[56..1]
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	81.0	[0..1]	[55..28]
gi\|84690282, gi\|... - gi\|84703848\|ref\|ZP_01017676.1\| 50S ribosomal protein L33 [Parvularcula bermudensis HTCC2503], gi\|846...	78.0	[0..3]	[56..31]
RL33_MANSM - 50S ribosomal protein L33 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpmG PE=3 SV=1	78.0	[0..1]	[56..1]
RL33_VIBPA - 50S ribosomal protein L33 OS=Vibrio parahaemolyticus GN=rpmG PE=3 SV=1 gi\|116185450, gi... - gi\|75856098\|ref\|ZP_00763733.1\| COG0267: Ribosomal protein L33 [Vibrio sp. Ex25], gi\|116185450\|ref\|ZP... gi\|91229867, gi\|... - gi\|91229867\|ref\|ZP_01262953.1\| 50S ribosomal protein L33 [Vibrio alginolyticus 12G01], gi\|91187357\|g... RL33_VIBCB - 50S ribosomal protein L33 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpmG PE=3 SV=1 gi\|149746509, gi... - gi\|153844856\|ref\|ZP_01993705.1\| ribosomal protein L33 [Vibrio parahaemolyticus AQ3810], gi\|153839970... RL33_VIBPA - 50S ribosomal protein L33 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmG PE... gi\|159172908, gi... - gi\|163803271\|ref\|ZP_02197150.1\| 50S ribosomal protein L33 [Vibrio campbellii AND4], gi\|159172908\|gb\|...	77.0	[0..1]	[56..1]
RL33_CUPPJ - 50S ribosomal protein L33 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpmG PE=3 SV=... RL33_CUPTR - 50S ribosomal protein L33 OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / L... RL33_CUPTR - 50S ribosomal protein L33 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpmG PE=3 SV=1 RL33_CUPNH - 50S ribosomal protein L33 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) G...	77.0	[0..1]	[56..1]
RL33_HISS2 - 50S ribosomal protein L33 OS=Histophilus somni (strain 2336) GN=rpmG PE=3 SV=1 RL33_HAES1 - 50S ribosomal protein L33 OS=Haemophilus somnus (strain 129Pt) GN=rpmG PE=3 SV=1	77.0	[0..1]	[56..1]
RL33_FRASN - 50S ribosomal protein L33 OS=Frankia sp. (strain EAN1pec) GN=rpmG PE=3 SV=1	76.0	[0..1]	[54..1]
RL33_FRAAA - 50S ribosomal protein L33 OS=Frankia alni (strain ACN14a) GN=rpmG PE=3 SV=1 RL33_FRASC - 50S ribosomal protein L33 OS=Frankia sp. (strain CcI3) GN=rpmG PE=3 SV=1	76.0	[0..1]	[54..1]
gi\|32307622 - gi\|32307622\|gb\|AAP79216.1\| ribosomal protein rpL33 [Bigelowiella natans]	76.0	[0..3]	[56..73]

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Predicted Domain #1

Region A:
Residues: [1-56]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKGAREKI RLVSTAETGH FYTTDKNKRN MPEKMEIKKF DPVVRKHVIY KEAKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits