YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148887351
Organism:	Escherichia coli
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148887351.

Description	E-value	Query Range	Subject Range
gi\|15831691, gi\|... - gi\|15831691\|ref\|NP_310464.1\| cell division modulator [Escherichia coli O157:H7 str. Sakai], gi\|13361... gi\|110805460, gi... - gi\|110805460\|ref\|YP_688980.1\| cell division modulator [Shigella flexneri 5 str. 8401], gi\|110615008\|... gi\|89108570, gi\|... - gi\|89108570\|ref\|AP_002350.1\| cell division modulator [Escherichia coli str. K-12 substr. W3110], gi\|... gi\|169754850, gi... - gi\|170019922\|ref\|YP_001724876.1\| cell division modulator [Escherichia coli ATCC 8739], gi\|169754850\|... gi\|56479916, gi\|... - gi\|56479916\|ref\|NP_707381.2\| cell division modulator [Shigella flexneri 2a str. 301], gi\|56383467\|gb... gi\|75513773 - gi\|75513773\|ref\|ZP_00736149.1\| hypothetical protein Ecol5_01002230 [Escherichia coli 53638] gi\|218361065, gi... - gi\|218554297\|ref\|YP_002387210.1\| cell division modulator [Escherichia coli IAI1], gi\|218361065\|emb\|C... gi\|74311950, gi\|... - gi\|74311950\|ref\|YP_310369.1\| cell division modulator [Shigella sonnei Ss046], gi\|73855427\|gb\|AAZ8813... gi\|169889223, gi... - gi\|170081388\|ref\|YP_001730708.1\| cell division modulator [Escherichia coli str. K-12 substr. DH10B],... gi\|218432326, gi... - gi\|218705229\|ref\|YP_002412748.1\| cell division modulator [Escherichia coli UMN026], gi\|218432326\|emb... gi\|218352021, gi... - gi\|218695289\|ref\|YP_002402956.1\| cell division modulator [Escherichia coli 55989], gi\|218352021\|emb\|... CEDA_SHIFL - Cell division activator cedA - Shigella flexneri CEDA_ECOLI - Cell division activator cedA - Escherichia coli CEDA_ECO57 - Cell division activator cedA - Escherichia coli O157:H7 gi\|30041251, gi\|... - gi\|30063002\|ref\|NP_837173.1\| cell division modulator [Shigella flexneri 2a str. 2457T], gi\|30041251\|... gi\|12515747, gi\|... - gi\|15802142\|ref\|NP_288164.1\| cell division modulator [Escherichia coli O157:H7 EDL933], gi\|12515747\|... gi\|75227708, gi\|... - gi\|75227708\|ref\|ZP_00714443.1\| hypothetical protein EcolB7_01003898 [Escherichia coli B7A], gi\|19116... gi\|16129685, gi\|... - gi\|1788026\|gb\|AAC74801.1\| cell division modulator [Escherichia coli K12], gi\|16129685\|ref\|NP_416245.... gi\|75236800 - gi\|75236800\|ref\|ZP_00720871.1\| hypothetical protein EcolE1_01001977 [Escherichia coli E110019] gi\|83569668 - gi\|83569668\|ref\|ZP_00921119.1\| hypothetical protein Sdys1_01002150 [Shigella dysenteriae 1012] gi\|254288578, gi... - gi\|254288578\|ref\|YP_003054326.1\| cell division modulator [Escherichia coli BL21(DE3)], gi\|253977885\|... gi\|253973691, gi... - gi\|254161790\|ref\|YP_003044898.1\| cell division modulator [Escherichia coli B str. REL606], gi\|253973...	151.0	[0..1]	[80..8]
CEDA_ECOL5 - Cell division activator CedA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cedA PE=3 SV=1 CEDA_ECOUT - Cell division activator CedA OS=Escherichia coli (strain UTI89 / UPEC) GN=cedA PE=3 SV=2 CEDA_ECOL6 - Cell division activator CedA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cedA ... CEDA_ECOL6 - Cell division activator CedA OS=Escherichia coli O6 GN=cedA PE=3 SV=2 gi\|190907955, gi... - gi\|191171625\|ref\|ZP_03033172.1\| cell division activator CedA [Escherichia coli F11], gi\|190907955\|gb... CEDA_ECOK1 - Cell division activator CedA OS=Escherichia coli O1:K1 / APEC GN=cedA PE=3 SV=2	150.0	[0..1]	[80..1]
gi\|75241394 - gi\|75241394\|ref\|ZP_00725245.1\| hypothetical protein EcolF_01001685 [Escherichia coli F11] gi\|26247983, gi\|... - gi\|26247983\|ref\|NP_754023.1\| cell division modulator [Escherichia coli CFT073], gi\|26108386\|gb\|AAN80... gi\|91072519, gi\|... - gi\|91210945\|ref\|YP_540931.1\| cell division modulator [Escherichia coli UTI89], gi\|91072519\|gb\|ABE074... gi\|218689672, gi... - gi\|218689672\|ref\|YP_002397884.1\| cell division modulator [Escherichia coli ED1a], gi\|218427236\|emb\|C... gi\|215486948, gi... - gi\|215486948\|ref\|YP_002329379.1\| cell division modulator [Escherichia coli O127:H6 str. E2348/69], g... gi\|227885846, gi... - gi\|227885846\|ref\|ZP_04003651.1\| cell division modulator [Escherichia coli 83972], gi\|227837419\|gb\|EE... gi\|117623903, gi... - gi\|117623903\|ref\|YP_852816.1\| cell division modulator [Escherichia coli APEC O1], gi\|115513027\|gb\|AB... gi\|226900437, gi... - gi\|237705680\|ref\|ZP_04536161.1\| cell division regulatory protein CedA [Escherichia sp. 3_2_53FAA], g...	150.0	[0..1]	[80..8]
gi\|214001289 - gi\|214001289\|ref\|ZP_03412024.1\| cell division modulator [Salmonella enterica subsp. enterica serovar... gi\|213981346 - gi\|213981346\|ref\|ZP_03408605.1\| cell division modulator [Salmonella enterica subsp. enterica serovar... gi\|213650301 - gi\|213650301\|ref\|ZP_03380354.1\| cell division modulator [Salmonella enterica subsp. enterica serovar... gi\|213622038 - gi\|213622038\|ref\|ZP_03374821.1\| cell division modulator [Salmonella enterica subsp. enterica serovar... CEDA_SALCH - Cell division activator CedA OS=Salmonella choleraesuis GN=cedA PE=3 SV=1 CEDA_SALPC - Cell division activator CedA OS=Salmonella paratyphi C (strain RKS4594) GN=cedA PE=3 SV=1 gi\|29137292, gi\|... - gi\|29141664\|ref\|NP_805006.1\| cell division modulator [Salmonella enterica subsp. enterica serovar Ty... gi\|16760575 - gi\|16760575\|ref\|NP_456192.1\| cell division modulator [Salmonella enterica subsp. enterica serovar Ty... CEDA_SALPA - Cell division activator CedA OS=Salmonella paratyphi A GN=cedA PE=3 SV=1 CEDA_SALTI - Cell division activator CedA OS=Salmonella typhi GN=cedA PE=3 SV=1 CEDA_SALTI - Cell division activator cedA OS=Salmonella typhi GN=cedA PE=3 SV=1 CEDA_SALCH - Cell division activator cedA OS=Salmonella choleraesuis GN=cedA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=cedA] [protein=cell division modulator] [protein_id=YP_005237178.1] [location=1409707..1409949... CEDA_SALPA - Cell division activator CedA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=cedA PE=3 SV=1 gi\|205329726, gi... - gi\|205329726\|gb\|EDZ16490.1\| cell division activator CedA [Salmonella enterica subsp. enterica serova... CEDA_SALCH - Cell division activator CedA OS=Salmonella choleraesuis (strain SC-B67) GN=cedA PE=3 SV=1 gi\|200390593, gi... - gi\|200390593\|ref\|ZP_03217204.1\| cell division activator CedA [Salmonella enterica subsp. enterica se... CEDA_SALDC - Cell division activator CedA OS=Salmonella dublin (strain CT_02021853) GN=cedA PE=3 SV=1 CEDA_SALPK - Cell division activator CedA OS=Salmonella paratyphi A (strain AKU_12601) GN=cedA PE=3 SV=1 gi\|197263110, gi... - gi\|197263110\|ref\|ZP_03163184.1\| cell division activator CedA [Salmonella enterica subsp. enterica se... gi\|213025791 - gi\|213025791\|ref\|ZP_03340238.1\| cell division modulator [Salmonella enterica subsp. enterica serovar... CEDA_SALEP - Cell division activator CedA OS=Salmonella enteritidis PT4 (strain P125109) GN=cedA PE=3 SV=1 CEDA_SALG2 - Cell division activator CedA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=cedA PE=3 SV=1 gi\|204927725, gi... - gi\|204927725\|ref\|ZP_03218926.1\| cell division activator CedA [Salmonella enterica subsp. enterica se... gi\|205341573, gi... - gi\|205341573\|gb\|EDZ28337.1\| cell division activator CedA [Salmonella enterica subsp. enterica serova... gi\|205347548, gi... - gi\|205347548\|gb\|EDZ34179.1\| cell division activator CedA [Salmonella enterica subsp. enterica serova... gi\|168238990, gi... - gi\|197288244\|gb\|EDY27629.1\| cell division activator CedA [Salmonella enterica subsp. enterica serova... gi\|205332603, gi... - gi\|205332603\|gb\|EDZ19367.1\| cell division activator CedA [Salmonella enterica subsp. enterica serova... CEDA_SALSV - Cell division activator CedA OS=Salmonella schwarzengrund (strain CVM19633) GN=cedA PE=3 SV=1 gi\|194456472, gi... - gi\|194470108\|ref\|ZP_03076092.1\| cell division activator CedA [Salmonella enterica subsp. enterica se... CEDA_SALHS - Cell division activator CedA OS=Salmonella heidelberg (strain SL476) GN=cedA PE=3 SV=1 CEDA_SALNS - Cell division activator CedA OS=Salmonella newport (strain SL254) GN=cedA PE=3 SV=1	149.0	[0..1]	[80..1]
CEDA_SALTY - Cell division activator cedA OS=Salmonella typhimurium GN=cedA PE=3 SV=1 CEDA_SALTY - Cell division activator CedA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cedA... CEDA_SALTY - Cell division activator CedA OS=Salmonella typhimurium GN=cedA PE=3 SV=1	143.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPLRQQNR QIISYVPRTE PAPPEHAIKM DSFRDVWMLR GKYVAFVLMG ESFLRSPAFT  60
   61 VPESAQRWAN QIRQEGEVTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	2bn8A
Description:	No description for 2bn8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits