YRC Public Data Repository - Protein Structure Prediction

Protein:	GALP_PIG
Organism:	Sus scrofa
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALP_PIG.

Description	E-value	Query Range	Subject Range
GALP_MOUSE - Galanin-like peptide OS=Mus musculus GN=Galp PE=2 SV=1 gi\|147898145, gi... - gi\|151555343\|gb\|AAI48727.1\| Galanin-like peptide [synthetic construct], gi\|147898145\|gb\|AAI40310.1\| ...	187.0	[0..1]	[96..1]
GALP_RAT - Galanin-like peptide OS=Rattus norvegicus GN=Galp PE=3 SV=1	184.0	[0..1]	[104..1]
gi\|114679247 - gi\|114679247\|ref\|XP_524495.2\| PREDICTED: similar to galanin-like peptide precursor [Pan troglodytes]	158.0	[0..17]	[96..19]
HGNC:24840\|MIM:6... - peptide GALP - galanin-like peptide gi\|151555123, gi... - gi\|151555123\|gb\|AAI48723.1\| Galanin-like peptide [synthetic construct], gi\|146327238\|gb\|AAI41469.1\| ...	158.0	[0..17]	[96..19]
gi\|109126180 - gi\|109126180\|ref\|XP_001090902.1\| PREDICTED: similar to galanin-like peptide precursor [Macaca mulatt... GALP_MACNE - Galanin-like peptide OS=Macaca nemestrina GN=GALP PE=2 SV=1	154.0	[0..17]	[96..18]
gi\|73947395 - gi\|73947395\|ref\|XP_853936.1\| PREDICTED: similar to zinc finger protein 444 [Canis familiaris]	146.0	[0..18]	[96..383]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTVPLIVL AVLLSLMESP ASAPVHRGRG GWTLNSAGYL LGPVLHPPSR AEGGGKGKTA  60
   61 LGILDLWKAI DGLPYPQSQL ASKRSLGETF AKPDSGVTFV GVPDVVPWKR IRPGTTRFQI 120
  121

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.221	a.29.12	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits