YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|144978261, gi...
Organism:	Haemophilus influenzae 22.1-21
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|144978261, gi....

Description	E-value	Query Range	Subject Range
gi\|75430394, gi\|... - gi\|75430394\|ref\|ZP_00732755.1\| conserved hypothetical protein HI1333 [Actinobacillus succinogenes 13...	139.0	[0..2]	[99..1]
gi\|52425017, gi\|... - gi\|52425017\|ref\|YP_088154.1\| hypothetical protein MS0962 [Mannheimia succiniciproducens MBEL55E], gi...	135.0	[0..3]	[99..38]
gi\|23467071, gi\|... - gi\|23467071\|ref\|ZP_00122656.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	134.0	[0..2]	[99..1]
gi\|15602578, gi\|... - gi\|15602578\|ref\|NP_245650.1\| hypothetical protein PM0713 [Pasteurella multocida subsp. multocida str...	134.0	[0..3]	[99..4]
gi\|168825857, gi... - gi\|32029182\|ref\|ZP_00132246.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	131.0	[0..2]	[99..1]
gi\|27065143, gi\|... - gi\|27065144\|pdb\|1JO0\|B Chain B, Structure Of Hi1333, A Hypothetical Protein From Haemophilus Influen...	130.0	[0..3]	[99..2]
gi\|56421058, gi\|... - gi\|56421058\|ref\|YP_148376.1\| hypothetical protein GK2523 [Geobacillus kaustophilus HTA426], gi\|56380...	130.0	[0..3]	[97..1]
gi\|109700171, gi... - gi\|76794982\|ref\|ZP_00777431.1\| Protein of unknown function UPF0044 [Pseudoalteromonas atlantica T6c]...	129.0	[0..2]	[99..22]
gi\|152025515, gi... - gi\|89201417\|ref\|ZP_01180158.1\| Protein of unknown function UPF0044 [Bacillus cereus subsp. cytotoxis...	127.0	[0..3]	[97..1]
gi\|88796734, gi\|... - gi\|88796734\|ref\|ZP_01112388.1\| RNA binding protein; ancient RNA-binding IF3-C fold [Alteromonas macl...	126.0	[0..2]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLSTKQKQ FLKGLAHHLN PVVMLGGNGL TEGVLAEIEN ALNHHELIKV KVAGADRETK  60
   61 QLIINAIVRE TKAAQVQTIG HILVLYRPSE EAKIQLPRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.045757
Match:	1jo0A
Description:	YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits