YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148875633, gi...
Organism:	Vibrio cholerae 623-39
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148875633, gi....

Description	E-value	Query Range	Subject Range
gi\|91191663, gi\|... - gi\|91223577\|ref\|ZP_01258842.1\| thiol:disulfide interchange protein DsbE [Vibrio alginolyticus 12G01]...	172.0	[0..1]	[184..1]
gi\|75854958, gi\|... - gi\|75854958\|ref\|ZP_00762625.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio sp. Ex25]...	172.0	[0..1]	[184..1]
gi\|86146104, gi\|... - gi\|86146104\|ref\|ZP_01064430.1\| thiol:disulfide interchange protein DsbE [Vibrio sp. MED222], gi\|8583... gi\|218708856, gi... - gi\|218708856\|ref\|YP_002416477.1\| Cytochrome c biogenesisprotein ccmG (Thiol:disulfide interchange pr...	169.0	[0..1]	[183..1]
gi\|153836987, gi... - gi\|153836987\|ref\|ZP_01989654.1\| thiol:disulfide interchange protein DsbE [Vibrio parahaemolyticus AQ... gi\|28898991, gi\|... - gi\|28898991\|ref\|NP_798596.1\| thiol:disulfide interchange protein DsbE [Vibrio parahaemolyticus RIMD ... gi\|28807210 - gi\|28807210\|dbj\|BAC60480.1\| thiol:disulfide interchange protein DsbE [Vibrio parahaemolyticus RIMD 2...	168.0	[0..1]	[184..1]
gi\|81240350, gi\|... - gi\|82776202\|ref\|YP_402551.1\| disulfide oxidoreductase [Shigella dysenteriae Sd197], gi\|81240350\|gb\|A...	168.0	[0..1]	[184..1]
gi\|90579961, gi\|... - gi\|90579961\|ref\|ZP_01235769.1\| thiol-disulfide interchange protein CcmG [Vibrio angustum S14], gi\|90... gi\|89073447, gi\|... - gi\|89073447\|ref\|ZP_01159970.1\| thiol-disulfide interchange protein CcmG [Photobacterium sp. SKA34], ...	168.0	[0..1]	[183..1]
gi\|208726395, gi... - gi\|208806594\|ref\|ZP_03248931.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 s... gi\|195935575 - gi\|195935575\|ref\|ZP_03080957.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia... gi\|208741927, gi... - gi\|208821804\|ref\|ZP_03262124.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 s... gi\|208735303, gi... - gi\|208814026\|ref\|ZP_03255355.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 s... gi\|209919654, gi... - gi\|209919654\|ref\|YP_002293738.1\| disulfide oxidoreductase [Escherichia coli SE11], gi\|209912913\|dbj\|... gi\|209158265, gi... - gi\|209396865\|ref\|YP_002271607.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 ... gi\|217319106, gi... - gi\|217326739\|ref\|ZP_03442822.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 s... gi\|215265485, gi... - gi\|215487413\|ref\|YP_002329844.1\| periplasmic thioredoxin CcmG of cytochrome c-type biogenesis [Esche... gi\|168767818, gi... - gi\|189362975\|gb\|EDU81394.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|168764689, gi... - gi\|189365359\|gb\|EDU83775.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|168780047, gi... - gi\|189001918\|gb\|EDU70904.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|187771190, gi... - gi\|187771190\|gb\|EDU35034.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|170019491, gi... - gi\|170019491\|ref\|YP_001724445.1\| periplasmic protein thiol--disulphide oxidoreductase DsbE [Escheric... gi\|189375602, gi... - gi\|189375602\|gb\|EDU94018.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|170684059, gi... - gi\|170684059\|ref\|YP_001744388.1\| thiol:disulfide interchange protein DsbE [Escherichia coli SMS-3-5]... gi\|170081815, gi... - gi\|170081815\|ref\|YP_001731135.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|117624390, gi... - gi\|117624390\|ref\|YP_853303.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia c... gi\|124501835, gi... - gi\|124526364\|ref\|ZP_01698317.1\| periplasmic protein thiol--disulphide oxidoreductase DsbE [Escherich... gi\|218361531, gi... - gi\|218554763\|ref\|YP_002387676.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|218549610, gi... - gi\|218549610\|ref\|YP_002383401.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|218695807, gi... - gi\|218695807\|ref\|YP_002403474.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|218365881, gi... - gi\|218559112\|ref\|YP_002392025.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|227887252, gi... - gi\|227887252\|ref\|ZP_04005057.1\| thiol:disulfide interchange protein [Escherichia coli 83972], gi\|227... gi\|226901034, gi... - gi\|237704668\|ref\|ZP_04535149.1\| disulfide oxidoreductase [Escherichia sp. 3_2_53FAA], gi\|226901034\|g... gi\|218432821, gi... - gi\|218705724\|ref\|YP_002413243.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|238901369, gi... - gi\|238901369\|ref\|YP_002927165.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|251785558, gi... - gi\|251785558\|ref\|YP_002999862.1\| hypothetical protein B21_02081 [Escherichia coli BL21], gi\|24237783... gi\|82544571, gi\|... - gi\|82544571\|ref\|YP_408518.1\| disulfide oxidoreductase [Shigella boydii Sb227], gi\|81245982\|gb\|ABB666... gi\|74312716, gi\|... - gi\|74312716\|ref\|YP_311135.1\| disulfide oxidoreductase [Shigella sonnei Ss046], gi\|73856193\|gb\|AAZ889... gi\|188491089, gi... - gi\|75514441\|ref\|ZP_00736719.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|75259667, gi\|... - gi\|75259667\|ref\|ZP_00730969.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|85675302, gi\|... - gi\|89109011\|ref\|AP_002791.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia co... gi\|157161676, gi... - gi\|75196237\|ref\|ZP_00706307.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|157157963, gi... - gi\|75186991\|ref\|ZP_00700258.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|75176173, gi\|... - gi\|75176173\|ref\|ZP_00696331.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Shigella boydii ... gi\|83588179, gi\|... - gi\|83588179\|ref\|ZP_00926804.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|191170095, gi... - gi\|75243011\|ref\|ZP_00726717.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|75237989, gi\|... - gi\|75237989\|ref\|ZP_00721994.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... DSBE_SHIFL - Thiol:disulfide interchange protein DsbE OS=Shigella flexneri GN=dsbE PE=3 SV=1 gi\|75231467, gi\|... - gi\|75231467\|ref\|ZP_00717836.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|24052633, gi\|... - gi\|24113581\|ref\|NP_708091.1\| disulfide oxidoreductase [Shigella flexneri 2a str. 301], gi\|24052633\|g... gi\|75211611, gi\|... - gi\|75211611\|ref\|ZP_00711690.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|91211485, gi\|... - gi\|91211485\|ref\|YP_541471.1\| disulfide oxidoreductase [Escherichia coli UTI89], gi\|91073059\|gb\|ABE07... gi\|13362553, gi\|... - gi\|15832338\|ref\|NP_311111.1\| DsbE [Escherichia coli O157:H7 str. Sakai], gi\|13362553\|dbj\|BAB36507.1\|... gi\|168754945, gi... - gi\|189357717\|gb\|EDU76136.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|110615719, gi... - gi\|110806171\|ref\|YP_689691.1\| disulfide oxidoreductase [Shigella flexneri 5 str. 8401], gi\|110615719... gi\|168749601, gi... - gi\|188016060\|gb\|EDU54182.1\| thiol:disulfide interchange protein DsbE [Escherichia coli O157:H7 str. ... gi\|30063635, gi\|... - gi\|30063635\|ref\|NP_837806.1\| disulfide oxidoreductase [Shigella flexneri 2a str. 2457T], gi\|30041888... DSBE_ECO57 - Thiol:disulfide interchange protein DsbE OS=Escherichia coli O157:H7 GN=dsbE PE=3 SV=1 EG12053 - periplasmic thioredoxin of cytochrome c-type biogenesis / Thiol-disulfide interchange protein, cytoc... gi\|15802748, gi\|... - gi\|15802748\|ref\|NP_288775.1\| disulfide oxidoreductase (in biogenesis of cytochrome c? [Escherichia c... EG12053 - periplasmic thioredoxin of cytochrome c-type biogenesis / Thiol-disulfide interchange protein, cytoc... gi\|253978275, gi... - gi\|254288968\|ref\|YP_003054716.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|254162207, gi... - gi\|254162207\|ref\|YP_003045315.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... gi\|254593494, gi... - gi\|254794094\|ref\|YP_003078931.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichi... DSBE_ECOLI - Thiol:disulfide interchange protein dsbE (Cytochrome c biogenesis protein ccmG) - Escherichia coli	167.0	[0..1]	[184..1]
gi\|84377380, gi\|... - gi\|84387697\|ref\|ZP_00990713.1\| thiol:disulfide interchange protein DsbE [Vibrio splendidus 12B01], g...	167.0	[0..1]	[183..1]
gi\|59712425, gi\|... - gi\|59712425\|ref\|YP_205201.1\| periplasmic thioredoxin of cytochrome c-type biogenesis [Vibrio fischer...	165.0	[0..1]	[183..1]
gi\|26248578, gi\|... - gi\|26248578\|ref\|NP_754618.1\| Thiol:disulfide interchange protein dsbE [Escherichia coli CFT073], gi\|...	165.0	[0..1]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKILFIPL VAFLLLAGVF ATQLMKNSAG DDPTKLESVL VGKTVPEFRL EDLAEPGKLY  60
   61 DQSIFKGEPL LLNVWATWCP TCYAEHQYLN ELAKQGVKII GLNYKDQRDK ATQWLNDLGN 120
  121 PYLISLFDGN GMLGLDLGVY GAPETFLIDA NGVIRYRHVG DVNSRNWQET LAPLYEKMLA 180
  181 EAKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	2b1kA
Description:	No description for 2b1kA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits