YRC Public Data Repository - Protein Structure Prediction

Protein:	GALA_COTJA
Organism:	Coturnix japonica
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALA_COTJA.

Description	E-value	Query Range	Subject Range
gi\|29122965 - gi\|29122965\|gb\|AAO65775.1\| preprogalanin 1A [Carassius auratus]	203.0	[0..1]	[116..1]
gi\|5002186 - gi\|5002186\|gb\|AAD37349.1\|AF141936_1 galanin [Coturnix japonica]	192.0	[0..1]	[117..1]
gi\|50747942 - gi\|50747942\|ref\|XP_421049.1\| PREDICTED: similar to galanin [Gallus gallus]	188.0	[0..1]	[117..115]
GALA_MOUSE - Galanin peptides OS=Mus musculus GN=Gal PE=2 SV=1	187.0	[0..1]	[117..1]
GALA_RAT - Galanin peptides OS=Rattus norvegicus GN=Gal PE=1 SV=1	183.0	[0..1]	[117..1]
gi\|190412 - gi\|190412\|gb\|AAA60178.1\| pro-galanin	169.0	[0..17]	[117..1]
gi\|68405077 - gi\|68405077\|ref\|XP_696847.1\| PREDICTED: similar to sporulation-induced transcript 4-associated prote...	166.0	[0..1]	[101..437]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRCAGFLFL SLILCAALSE TFGLVLSAKE KRGWTLNSAG YLLGPHAVDN HRSFNDKHGF  60
   61 TGKREIQPEE DIKAGNIGRP LADENIVRTV VEFLTYLHLK EAGALDNLPS PEETNES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.0
Match:	PF06540.2
Description:	No description for PF06540.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits