YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148875602, gi...
Organism:	Vibrio cholerae 623-39
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148875602, gi....

Description	E-value	Query Range	Subject Range
gi\|68343371, gi\|... - gi\|70729072\|ref\|YP_258808.1\| heme exporter protein CcmC [Pseudomonas fluorescens Pf-5], gi\|68343371\|...	210.0	[0..2]	[250..3]
gi\|150963515, gi... - gi\|94415043\|ref\|ZP_01294892.1\| hypothetical protein PaerP_01003151 [Pseudomonas aeruginosa PA7], gi\|...	209.0	[0..2]	[250..4]
gi\|77457806, gi\|... - gi\|77457806\|ref\|YP_347311.1\| cytochrome c-type biogenesis protein CcmC [Pseudomonas fluorescens Pf0-...	209.0	[0..2]	[250..3]
gi\|194536767, gi... - gi\|75818721\|ref\|ZP_00748850.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|229522015, gi... - gi\|229522015\|ref\|ZP_04411432.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae TM 11079-... gi\|150423115, gi... - gi\|254286824\|ref\|ZP_04961777.1\| heme exporter protein C [Vibrio cholerae AM-19226], gi\|197751690\|ref... gi\|121586923, gi... - gi\|121586923\|ref\|ZP_01676703.1\| heme exporter protein C [Vibrio cholerae 2740-80], gi\|121548859\|gb\|E... gi\|149740217, gi... - gi\|153826100\|ref\|ZP_01978767.1\| heme exporter protein C [Vibrio cholerae MZO-2], gi\|149740217\|gb\|EDM... gi\|229528927, gi... - gi\|229528927\|ref\|ZP_04418317.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae 12129(1)]... gi\|229524063, gi... - gi\|229524063\|ref\|ZP_04413468.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae bv. alben... gi\|124115791, gi... - gi\|153213730\|ref\|ZP_01948982.1\| heme exporter protein C [Vibrio cholerae 1587], gi\|124115791\|gb\|EAY3...	208.0	[0..1]	[250..1]
gi\|23472660, gi\|... - gi\|66046620\|ref\|YP_236461.1\| cytochrome c-type biogenesis protein CcmC [Pseudomonas syringae pv. syr...	208.0	[0..2]	[246..12]
tr\|D7HAA7\|D7HAA7... - Heme exporter protein C OS=Vibrio cholerae RC385 GN=VCRC385_01384 PE=4 SV=1 gi\|194535415, gi... - gi\|75822834\|ref\|ZP_00752393.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi...	208.0	[0..1]	[250..1]
gi\|49082260 - gi\|49082260\|gb\|AAT50530.1\| PA1477 [synthetic construct]	208.0	[0..2]	[250..4]
CCMC_PSEAE - Heme exporter protein C OS=Pseudomonas aeruginosa GN=ccmC PE=3 SV=1 gi\|116049420, gi... - gi\|53727704\|ref\|ZP_00139103.2\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|84321867, gi\|... - gi\|84321867\|ref\|ZP_00970220.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|126193204, gi... - gi\|84328392\|ref\|ZP_00976399.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|107100910 - gi\|107100910\|ref\|ZP_01364828.1\| hypothetical protein PaerPA_01001940 [Pseudomonas aeruginosa PACS2] CCMC_PSEAE - Heme exporter protein C OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 122...	207.0	[0..2]	[250..4]
gi\|95111772 - gi\|95111772\|emb\|CAK16496.1\| cytochrome c-type biogenesis protein CcmC; heme ABC export system, perme... gi\|104782785, gi... - gi\|95111772\|emb\|CAK16496.1\| cytochrome c-type biogenesis protein CcmC; heme ABC export system, perme...	206.0	[0..2]	[246..5]
gi\|71554649, gi\|... - gi\|71734096\|ref\|YP_275471.1\| heme exporter protein CcmC [Pseudomonas syringae pv. phaseolicola 1448A...	206.0	[0..2]	[246..7]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWLHPYAK PDAAYQLCGK LLPWFASLGF LFLAVGTVLG LAYAPADYQQ GDSFRIIYIH  60
   61 VPAAIWSMGV YMSMAIAAFI GIVWQLRISD MAALAMAPIG AVYTFIALIT GAIWGKPMWG 120
  121 AWWVWDARLT SELVLLFLYL GVIALYHAFD DQKTAAKAAG ILAIVGVINL PIIHFSVEWW 180
  181 NTLHQGATIT KFAKPSIAPE MLWPLLACIL GFAFFFAALT MIRLRNEILS RESHRPWVSE 240
  241 LANQTVRGNR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.619789
Match:	PF01578.11
Description:	No description for PF01578.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits