YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153997593, gi...
Organism:	Yersinia pestis CA88-4125
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153997593, gi....

Description	E-value	Query Range	Subject Range
gi\|188488828, gi... - gi\|75512340\|ref\|ZP_00734892.1\| hypothetical protein Ecol5_01003435 [Escherichia coli 53638], gi\|1884...	2.0E-34	[2..104]	[5..107]
YGBE_ECOLI - Inner membrane protein ygbE - Escherichia coli gi\|110616168, gi... - gi\|110806620\|ref\|YP_690140.1\| hypothetical protein SFV_2749 [Shigella flexneri 5 str. 8401], gi\|1106... EG12707 - DUF3561 family inner membrane protein / Inner membrane protein, DUF3561 family, function unknown gi\|124498508, gi... - gi\|124531494\|ref\|ZP_01701748.1\| putative cytochrome oxidase subunit [Escherichia coli B], gi\|1244985... gi\|238901886, gi... - gi\|238901886\|ref\|YP_002927682.1\| conserved inner membrane protein [Escherichia coli BW2952], gi\|2388... gi\|251786031, gi... - gi\|251786031\|ref\|YP_003000335.1\| hypothetical protein B21_02564 [Escherichia coli BL21], gi\|24237830... gi\|254289441, gi... - gi\|254289441\|ref\|YP_003055189.1\| conserved inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|193065061, gi... - gi\|75256955\|ref\|ZP_00728531.1\| hypothetical protein EcolE2_01003204 [Escherichia coli E22], gi\|19306... gi\|218555296, gi... - gi\|218555296\|ref\|YP_002388209.1\| hypothetical protein ECIAI1_2851 [Escherichia coli IAI1], gi\|218362... gi\|254037792, gi... - gi\|254037792\|ref\|ZP_04871850.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683941... gi\|74313315, gi\|... - gi\|74313315\|ref\|YP_311734.1\| hypothetical protein SSON_2897 [Shigella sonnei Ss046], gi\|73856792\|gb\|... gi\|209913451, gi... - gi\|209920192\|ref\|YP_002294276.1\| hypothetical protein ECSE_3001 [Escherichia coli SE11], gi\|20991345... gi\|253974581, gi... - gi\|254162680\|ref\|YP_003045788.1\| conserved inner membrane protein [Escherichia coli B str. REL606], ... gi\|191166811, gi... - gi\|75230040\|ref\|ZP_00716550.1\| hypothetical protein EcolB7_01001728 [Escherichia coli B7A], gi\|19116... gi\|218701240, gi... - gi\|218701240\|ref\|YP_002408869.1\| hypothetical protein ECIAI39_2938 [Escherichia coli IAI39], gi\|2183... gi\|75235652, gi\|... - gi\|75235652\|ref\|ZP_00719826.1\| hypothetical protein EcolE1_01002636 [Escherichia coli E110019], gi\|1... gi\|218696347, gi... - gi\|218696347\|ref\|YP_002404014.1\| hypothetical protein EC55989_3022 [Escherichia coli 55989], gi\|2183... gi\|89109536, gi\|... - gi\|89109536\|ref\|AP_003316.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|81242264, gi\|... - gi\|82778116\|ref\|YP_404465.1\| hypothetical protein SDY_2948 [Shigella dysenteriae Sd197], gi\|81242264... gi\|81246589, gi\|... - gi\|82545178\|ref\|YP_409125.1\| hypothetical protein SBO_2771 [Shigella boydii Sb227], gi\|81246589\|gb\|A... gi\|194422086, gi... - gi\|83585592\|ref\|ZP_00924235.1\| hypothetical protein Ecol1_01003170 [Escherichia coli 101-1], gi\|1944... EG12707 - DUF3561 family inner membrane protein / Inner membrane protein, DUF3561 family, function unknown gi\|157067877, gi... - gi\|75196724\|ref\|ZP_00706794.1\| hypothetical protein EcolH_01002536 [Escherichia coli HS], gi\|1571621... gi\|170082324, gi... - gi\|170082324\|ref\|YP_001731644.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|194414049, gi... - gi\|75210956\|ref\|ZP_00711080.1\| hypothetical protein EcolB_01002021 [Escherichia coli B171], gi\|19442... gi\|170019005, gi... - gi\|170019005\|ref\|YP_001723959.1\| hypothetical protein EcolC_0963 [Escherichia coli ATCC 8739], gi\|16... gi\|187429090, gi... - gi\|75176387\|ref\|ZP_00696531.1\| hypothetical protein SboyB_01003616 [Shigella boydii BS512], gi\|18773... gi\|194420151, gi... - gi\|194431795\|ref\|ZP_03064086.1\| putative membrane protein [Shigella dysenteriae 1012], gi\|194420151\|... gi\|157080744, gi... - gi\|75187477\|ref\|ZP_00700744.1\| hypothetical protein EcolE_01000708 [Escherichia coli E24377A], gi\|15... gi\|170681455, gi... - gi\|170681455\|ref\|YP_001744899.1\| hypothetical protein EcSMS35_2875 [Escherichia coli SMS-3-5], gi\|17...	2.0E-34	[2..104]	[5..107]
gi\|30042362, gi\|... - gi\|30064106\|ref\|NP_838277.1\| hypothetical protein S2965 [Shigella flexneri 2a str. 2457T], gi\|300423... gi\|24053168, gi\|... - gi\|24114044\|ref\|NP_708554.1\| hypothetical protein SF2772 [Shigella flexneri 2a str. 301], gi\|2405316...	3.0E-34	[2..104]	[5..107]
gi\|117624984, gi... - gi\|117624984\|ref\|YP_853972.1\| hypothetical protein APECO1_3774 [Escherichia coli APEC O1], gi\|115514... gi\|91073691, gi\|... - gi\|91212117\|ref\|YP_542103.1\| hypothetical protein UTI89_C3120 [Escherichia coli UTI89], gi\|91073691\|... gi\|215266141, gi... - gi\|215488069\|ref\|YP_002330500.1\| hypothetical protein E2348C_3019 [Escherichia coli O127:H6 str. E23... gi\|218366511, gi... - gi\|218559742\|ref\|YP_002392655.1\| hypothetical protein ECS88_3020 [Escherichia coli S88], gi\|21836651... gi\|26109562, gi\|... - gi\|26249155\|ref\|NP_755195.1\| hypothetical protein c3316 [Escherichia coli CFT073], gi\|26109562\|gb\|AA... gi\|237706621, gi... - gi\|237706621\|ref\|ZP_04537102.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227888292, gi... - gi\|227888292\|ref\|ZP_04006097.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783456...	3.0E-34	[2..104]	[5..107]
gi\|168762849, gi... - gi\|189366845\|gb\|EDU85261.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|168768843, gi... - gi\|189362109\|gb\|EDU80528.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168774716, gi... - gi\|187769657\|gb\|EDU33501.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|168778734, gi... - gi\|189003401\|gb\|EDU72387.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|13363074, gi\|... - gi\|15832857\|ref\|NP_311630.1\| hypothetical protein ECs3603 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168749924, gi... - gi\|188015786\|gb\|EDU53908.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189357242, gi... - gi\|189357242\|gb\|EDU75661.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|13363074, gi\|... - gi\|15832857\|ref\|NP_311630.1\| putative cytochrome oxidase subunit [Escherichia coli O157:H7], gi\|1336... gi\|218706243, gi... - gi\|218706243\|ref\|YP_002413762.1\| hypothetical protein ECUMN_3073 [Escherichia coli UMN026], gi\|21843... gi\|209761690, gi... - pir\|\|C91079 probable cytochrome oxidase subunit [imported] - Escherichia coli (strain O157:H7, subst... gi\|12517203, gi\|... - gi\|15803266\|ref\|NP_289298.1\| hypothetical protein Z4057 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|208733919, gi... - gi\|208812642\|ref\|ZP_03253971.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|254794689, gi... - gi\|254794689\|ref\|YP_003079526.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|208741346, gi... - gi\|208821223\|ref\|ZP_03261543.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|209162036, gi... - gi\|209400636\|ref\|YP_002272212.1\| hypothetical protein ECH74115_4001 [Escherichia coli O157:H7 str. E... gi\|217327742, gi... - gi\|217327742\|ref\|ZP_03443825.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|189372175, gi... - gi\|189372175\|gb\|EDU90591.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168800170, gi... - gi\|189377466\|gb\|EDU95882.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|195939462 - gi\|195939462\|ref\|ZP_03084844.1\| hypothetical protein EscherichcoliO157_24128 [Escherichia coli O157:... gi\|208725826, gi... - gi\|208806025\|ref\|ZP_03248362.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi...	4.0E-34	[2..104]	[5..107]
gi\|110344483, gi... - gi\|110642891\|ref\|YP_670621.1\| hypothetical protein ECP_2731 [Escherichia coli 536], gi\|110344483\|gb\|... gi\|75241860, gi\|... - gi\|75241860\|ref\|ZP_00725679.1\| COG0841: Cation/multidrug efflux pump [Escherichia coli F11], gi\|1911... gi\|218428440, gi... - gi\|218690876\|ref\|YP_002399088.1\| hypothetical protein ECED1_3205 [Escherichia coli ED1a], gi\|2184284...	6.0E-34	[2..104]	[5..107]
gi\|22124737, gi\|... - gi\|22124737\|ref\|NP_668160.1\| hypothetical protein y0826 [Yersinia pestis KIM], gi\|21957555\|gb\|AAM844... gi\|45440181, gi\|... - gi\|45440181\|ref\|NP_991720.1\| hypothetical protein YP_0324 [Yersinia pestis biovar Microtus str. 9100...	2.0E-32	[1..105]	[7..111]
lcl\|NC_016856.1_... - [gene=ygbE] [protein=hypothetical protein] [protein_id=YP_005239045.1] [location=complement(3092213.... gi\|25372002, gi\|... - gi\|25372002\|pir\|\|AG0856 conserved hypothetical protein STY3057 [imported] - Salmonella enterica subs... gi\|16761704 - gi\|16761704\|ref\|NP_457321.1\| hypothetical protein STY3057 [Salmonella enterica subsp. enterica serov... gi\|205353873, gi... - gi\|205353873\|ref\|YP_002227674.1\| hypothetical protein SG2835 [Salmonella enterica subsp. enterica se... gi\|207858192, gi... - gi\|207858192\|ref\|YP_002244843.1\| hypothetical protein SEN2771 [Salmonella enterica subsp. enterica s... gi\|16766238, gi\|... - gi\|16766238\|ref\|NP_461853.1\| hypothetical protein STM2932 [Salmonella typhimurium LT2], gi\|16421481\|... gi\|29143188, gi\|... - gi\|29143188\|ref\|NP_806530.1\| hypothetical protein t2833 [Salmonella enterica subsp. enterica serovar...	4.0E-31	[2..104]	[16..118]
gi\|77976015 - gi\|77976015\|ref\|ZP_00831548.1\| hypothetical protein YfreA_01000110 [Yersinia frederiksenii ATCC 3364...	7.0E-31	[1..105]	[21..125]
gi\|224584710, gi... - gi\|224584710\|ref\|YP_002638508.1\| hypothetical protein SPC_2975 [Salmonella enterica subsp. enterica ... gi\|62129067, gi\|... - gi\|62181434\|ref\|YP_217851.1\| hypothetical protein SC2864 [Salmonella enterica subsp. enterica serova...	3.0E-30	[2..104]	[16..118]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNVTQIMND EQQEEEEPSY SFSGGVTGFV FYWLAFAIPF FVYGPNTVFF LLYTWPFFLA  60
   61 LMPVSVLIGI ALGMLSRGHL LFTIGGTGIA VVCLFWMLFS LLTGW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits