YRC Public Data Repository - Protein Structure Prediction

Protein:	FUCM_HAEIN, FUCU...
Organism:	Haemophilus influenzae
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUCM_HAEIN, FUCU....

Description	E-value	Query Range	Subject Range
gi\|14973676, gi\|... - gi\|15901975\|ref\|NP_346579.1\| fucose operon FucU protein [Streptococcus pneumoniae TIGR4], gi\|1497367... gi\|25302346 - pir\|\|B95253 fucose operon FucU protein [imported] - Streptococcus pneumoniae (strain TIGR4)	187.0	[0..1]	[141..1]
gi\|242244451, gi... - gi\|242244451\|ref\|ZP_04798888.1\| ribose ABC superfamily ATP binding cassette transporter, membrane pr... gi\|25302348 - pir\|\|H98117 hypothetical protein fucU [imported] - Streptococcus pneumoniae (strain R6) gi\|237650658 - gi\|237650658\|ref\|ZP_04524910.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974] gi\|15459672, gi\|... - gi\|15904012\|ref\|NP_359562.1\| fucose pathway protein, function unknown [Streptococcus pneumoniae R6],... gi\|237822213 - gi\|237822213\|ref\|ZP_04598058.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974M2] gi\|168996145, gi... - gi\|169833643\|ref\|YP_001695520.1\| fucose operon FucU protein [Streptococcus pneumoniae Hungary19A-6],... gi\|220675332, gi... - gi\|221232870\|ref\|YP_002512024.1\| fuscose operon fucU protein [Streptococcus pneumoniae ATCC 700669],... gi\|168491694, gi... - gi\|183574054\|gb\|EDT94582.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC0288-04], gi\|168... gi\|183575903, gi... - gi\|183575903\|gb\|EDT96431.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC3059-06], gi\|168... gi\|147925616, gi... - gi\|148988805\|ref\|ZP_01820220.1\| L-fucose isomerase [Streptococcus pneumoniae SP6-BS73], gi\|147925616... gi\|172042686, gi... - gi\|172042686\|gb\|EDT50732.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC1873-00], gi\|168... gi\|183572194, gi... - gi\|183572194\|gb\|EDT92722.1\| fucose operon FucU protein [Streptococcus pneumoniae SP195], gi\|16848923... gi\|116516128, gi... - gi\|116516128\|ref\|YP_817379.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae D... gi\|147930755, gi... - gi\|149020077\|ref\|ZP_01835051.1\| L-fucose isomerase [Streptococcus pneumoniae SP23-BS72], gi\|14793075... gi\|147759016, gi... - gi\|149003013\|ref\|ZP_01827924.1\| L-fucose isomerase [Streptococcus pneumoniae SP14-BS69], gi\|14775901... gi\|148991983, gi... - gi\|148991983\|ref\|ZP_01821757.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae... gi\|225857732, gi... - gi\|225857732\|ref\|YP_002739243.1\| fucose operon FucU protein [Streptococcus pneumoniae P1031], gi\|225... gi\|225861983, gi... - gi\|225861983\|ref\|YP_002743492.1\| fucose operon FucU protein [Streptococcus pneumoniae Taiwan19F-14],... gi\|225855658, gi... - gi\|225855658\|ref\|YP_002737170.1\| fucose operon FucU protein [Streptococcus pneumoniae JJA], gi\|22572...	187.0	[0..1]	[141..1]
FUCM_ACTP7 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=fucU PE=3 SV=1 gi\|32034309 - gi\|32034309\|ref\|ZP_00134509.1\| COG4154: Fucose dissimilation pathway protein FucU [Actinobacillus pl... FUCM_ACTPJ - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=fucU PE=3 SV=1 FUCM_ACTP2 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=fucU PE=3 SV=1	186.0	[0..1]	[143..1]
gi\|80977860, gi\|... - gi\|81096081\|ref\|ZP_00874431.1\| RbsD or FucU transport [Streptococcus suis 89/1591], gi\|80977860\|gb\|E...	185.0	[0..1]	[141..1]
gi\|116651405, gi... - gi\|67667268\|ref\|ZP_00464496.1\| RbsD or FucU transport [Burkholderia cenocepacia HI2424], gi\|67099163... gi\|67655525, gi\|... - gi\|67655525\|ref\|ZP_00452911.1\| RbsD or FucU transport [Burkholderia cenocepacia AU 1054], gi\|6709680...	185.0	[0..1]	[140..23]
gi\|89069711, gi\|... - gi\|89069711\|ref\|ZP_01157047.1\| FucU, fucose operon fucU protein [Oceanicola granulosus HTCC2516], gi...	185.0	[0..1]	[141..1]
gi\|37199108, gi\|... - gi\|37680361\|ref\|NP_934970.1\| fucose dissimilation pathway protein FucU [Vibrio vulnificus YJ016], gi...	185.0	[0..1]	[143..12]
gi\|77977919, gi\|... - gi\|77977919\|ref\|ZP_00833356.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	183.0	[0..1]	[141..1]
gi\|77973817, gi\|... - gi\|77973817\|ref\|ZP_00829362.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	182.0	[0..1]	[141..1]
gi\|42629101 - gi\|42629101\|ref\|ZP_00154650.1\| COG4154: Fucose dissimilation pathway protein FucU [Haemophilus influ...	182.0	[0..1]	[144..1]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKGIHPALS PELLKTLAEM GHGDEIVLAD AHFPAHSLHK NVIRADGISI DILLEAITPL  60
   61 FEFDAYVDAP LLMMKAVEGD SLDPNVETRY LNAIESAVGF TPNLTCLERF DFYTRAKQAY 120
  121 AVVVSGEIAK YGNIIIKKGV TPIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	2ob5A
Description:	No description for 2ob5A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00199656218015398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: