YRC Public Data Repository - Protein Structure Prediction

Protein:	FUCU_ECOLI
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUCU_ECOLI.

Description	E-value	Query Range	Subject Range
FUCM_SALPB - L-fucose mutarotase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fucU PE=3 SV=1 gi\|238909757 - gi\|238909757\|ref\|ZP_04653594.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... FUCM_SALPA - L-fucose mutarotase OS=Salmonella paratyphi A GN=fucU PE=3 SV=1 FUCM_SALCH - L-fucose mutarotase OS=Salmonella choleraesuis GN=fucU PE=3 SV=1 gi\|16761756 - gi\|16761756\|ref\|NP_457373.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica serova... FUCM_SALTI - L-fucose mutarotase OS=Salmonella typhi GN=fucU PE=3 SV=1 gi\|29138873, gi\|... - gi\|29143240\|ref\|NP_806582.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica serova... gi\|194458918, gi... - gi\|194472554\|ref\|ZP_03078538.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica ser... FUCM_SALHS - L-fucose mutarotase OS=Salmonella heidelberg (strain SL476) GN=fucU PE=3 SV=1 FUCM_SALNS - L-fucose mutarotase OS=Salmonella newport (strain SL254) GN=fucU PE=3 SV=1 gi\|168820296, gi... - gi\|205342982\|gb\|EDZ29746.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... FUCM_SALPK - L-fucose mutarotase OS=Salmonella paratyphi A (strain AKU_12601) GN=fucU PE=3 SV=1 gi\|197242924, gi... - gi\|197264669\|ref\|ZP_03164743.1\| fucose operon protein FucU [Salmonella enterica subsp. enterica sero... FUCM_SALA4 - L-fucose mutarotase OS=Salmonella agona (strain SL483) GN=fucU PE=3 SV=1 FUCM_SALSV - L-fucose mutarotase OS=Salmonella schwarzengrund (strain CVM19633) GN=fucU PE=3 SV=1 FUCM_SALCH - L-fucose mutarotase OS=Salmonella choleraesuis (strain SC-B67) GN=fucU PE=3 SV=1 gi\|205324700, gi... - gi\|205324700\|gb\|EDZ12539.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... FUCM_SALPA - L-fucose mutarotase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=fucU PE=3 SV=1 FUCM_SALPB - L-fucose mutarotase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fucU PE=3 SV=1 gi\|195633284, gi... - gi\|195633284\|gb\|EDX51698.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|205338029, gi... - gi\|205338029\|gb\|EDZ24793.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|168236030, gi... - gi\|197290667\|gb\|EDY30021.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|168231073, gi... - gi\|205334533\|gb\|EDZ21297.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... FUCM_SALPC - L-fucose mutarotase OS=Salmonella paratyphi C (strain RKS4594) GN=fucU PE=3 SV=1 FUCM_SALEP - L-fucose mutarotase OS=Salmonella enteritidis PT4 (strain P125109) GN=fucU PE=3 SV=1 gi\|204928179, gi... - gi\|204928179\|ref\|ZP_03219379.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica ser... gi\|200388619, gi... - gi\|200388619\|ref\|ZP_03215231.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica ser... FUCM_SALDC - L-fucose mutarotase OS=Salmonella dublin (strain CT_02021853) GN=fucU PE=3 SV=1 gi\|214003285 - gi\|214003285\|ref\|ZP_03414020.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... gi\|213854878 - gi\|213854878\|ref\|ZP_03383118.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... gi\|213424892 - gi\|213424892\|ref\|ZP_03357642.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... gi\|213052482 - gi\|213052482\|ref\|ZP_03345360.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser...	191.0	[0..1]	[140..1]
gi\|167993476, gi... - gi\|205328448\|gb\|EDZ15212.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|205349306, gi... - gi\|205349306\|gb\|EDZ35937.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=fucU] [protein=putative L-fucose-binding protein] [protein_id=YP_005239099.1] [location=315132... FUCM_SALTY - L-fucose mutarotase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fucU PE=3 SV=... FUCM_SALTY - L-fucose mutarotase OS=Salmonella typhimurium GN=fucU PE=3 SV=1	191.0	[0..1]	[140..1]
gi\|30064149, gi\|... - gi\|30064149\|ref\|NP_838320.1\| protein of fucose operon [Shigella flexneri 2a str. 2457T], gi\|30042405... FUCM_SHIFL - L-fucose mutarotase OS=Shigella flexneri GN=fucU PE=3 SV=1 gi\|24053218, gi\|... - gi\|24114088\|ref\|NP_708598.1\| protein of fucose operon [Shigella flexneri 2a str. 301], gi\|24053218\|g...	190.0	[0..1]	[140..1]
gi\|14973676, gi\|... - gi\|15901975\|ref\|NP_346579.1\| fucose operon FucU protein [Streptococcus pneumoniae TIGR4], gi\|1497367... gi\|25302346 - pir\|\|B95253 fucose operon FucU protein [imported] - Streptococcus pneumoniae (strain TIGR4)	188.0	[0..1]	[139..1]
gi\|242244451, gi... - gi\|242244451\|ref\|ZP_04798888.1\| ribose ABC superfamily ATP binding cassette transporter, membrane pr... gi\|25302348 - pir\|\|H98117 hypothetical protein fucU [imported] - Streptococcus pneumoniae (strain R6) gi\|237650658 - gi\|237650658\|ref\|ZP_04524910.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974] gi\|15459672, gi\|... - gi\|15904012\|ref\|NP_359562.1\| fucose pathway protein, function unknown [Streptococcus pneumoniae R6],... gi\|237822213 - gi\|237822213\|ref\|ZP_04598058.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974M2] gi\|168996145, gi... - gi\|169833643\|ref\|YP_001695520.1\| fucose operon FucU protein [Streptococcus pneumoniae Hungary19A-6],... gi\|220675332, gi... - gi\|221232870\|ref\|YP_002512024.1\| fuscose operon fucU protein [Streptococcus pneumoniae ATCC 700669],... gi\|168491694, gi... - gi\|183574054\|gb\|EDT94582.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC0288-04], gi\|168... gi\|183575903, gi... - gi\|183575903\|gb\|EDT96431.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC3059-06], gi\|168... gi\|147925616, gi... - gi\|148988805\|ref\|ZP_01820220.1\| L-fucose isomerase [Streptococcus pneumoniae SP6-BS73], gi\|147925616... gi\|172042686, gi... - gi\|172042686\|gb\|EDT50732.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC1873-00], gi\|168... gi\|183572194, gi... - gi\|183572194\|gb\|EDT92722.1\| fucose operon FucU protein [Streptococcus pneumoniae SP195], gi\|16848923... gi\|116516128, gi... - gi\|116516128\|ref\|YP_817379.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae D... gi\|147930755, gi... - gi\|149020077\|ref\|ZP_01835051.1\| L-fucose isomerase [Streptococcus pneumoniae SP23-BS72], gi\|14793075... gi\|147759016, gi... - gi\|149003013\|ref\|ZP_01827924.1\| L-fucose isomerase [Streptococcus pneumoniae SP14-BS69], gi\|14775901... gi\|148991983, gi... - gi\|148991983\|ref\|ZP_01821757.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae... gi\|225857732, gi... - gi\|225857732\|ref\|YP_002739243.1\| fucose operon FucU protein [Streptococcus pneumoniae P1031], gi\|225... gi\|225861983, gi... - gi\|225861983\|ref\|YP_002743492.1\| fucose operon FucU protein [Streptococcus pneumoniae Taiwan19F-14],... gi\|225855658, gi... - gi\|225855658\|ref\|YP_002737170.1\| fucose operon FucU protein [Streptococcus pneumoniae JJA], gi\|22572...	188.0	[0..1]	[139..1]
gi\|80977860, gi\|... - gi\|81096081\|ref\|ZP_00874431.1\| RbsD or FucU transport [Streptococcus suis 89/1591], gi\|80977860\|gb\|E...	186.0	[0..1]	[139..1]
gi\|77958705, gi\|... - gi\|77958705\|ref\|ZP_00822734.1\| COG4154: Fucose dissimilation pathway protein FucU [Yersinia bercovie...	184.0	[0..1]	[140..1]
gi\|47228872 - gi\|47228872\|emb\|CAG09387.1\| unnamed protein product [Tetraodon nigroviridis]	184.0	[0..1]	[140..3]
FUCM_ACTP7 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=fucU PE=3 SV=1 gi\|32034309 - gi\|32034309\|ref\|ZP_00134509.1\| COG4154: Fucose dissimilation pathway protein FucU [Actinobacillus pl... FUCM_ACTPJ - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=fucU PE=3 SV=1 FUCM_ACTP2 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=fucU PE=3 SV=1	182.0	[0..1]	[140..1]
FUCM_DANRE - Fucose mutarotase OS=Danio rerio GN=fuom PE=2 SV=1	182.0	[0..2]	[140..4]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTISPLIS PELLKVLAEM GHGDEIIFSD AHFPAHSMGP QVIRADGLLV SDLLQAIIPL  60
   61 FELDSYAPPL VMMAAVEGDT LDPEVERRYR NALSLQAPCP DIIRINRFAF YERAQKAFAI 120
  121 VITGERAKYG NILLKKGVTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	2ob5A
Description:	No description for 2ob5A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00199656218015398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: