YRC Public Data Repository - Protein Structure Prediction

Protein:	FTRC1_SPIOL
Organism:	Spinacia oleracea
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FTRC1_SPIOL.

Description	E-value	Query Range	Subject Range
FTRC_ARATH - Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana GN=FTRC PE=2...	210.0	[0..1]	[144..3]
FTRC_SOYBN - Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1	209.0	[0..6]	[144..2]
gi\|14275859 - gi\|14275859\|emb\|CAC39620.1\| ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum]	209.0	[0..1]	[144..1]
gi\|113882907, gi... - gi\|113955556\|ref\|YP_731678.1\| ferredoxin thioredoxin reductase, catalytic beta chain [Synechococcus ...	205.0	[0..1]	[140..1]
gi\|47155380 - gi\|47155380\|dbj\|BAD18925.1\| ferredoxin [Codonopsis lanceolata]	200.0	[0..1]	[144..3]
FTRC2_SPIOL - Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1	199.0	[0..1]	[144..1]
FTRC_MAIZE - Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1	191.0	[0..13]	[143..18]
gi\|87125291, gi\|... - gi\|87125291\|ref\|ZP_01081137.1\| Ferredoxin thioredoxin reductase, catalytic beta chain [Synechococcus...	191.0	[0..24]	[140..1]
FTRC_ORYSJ - Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Oryza sativa subsp. japonica GN=O...	190.0	[0..1]	[144..1]
gi\|88807202, gi\|... - gi\|88807202\|ref\|ZP_01122714.1\| ferredoxin thioredoxin reductase, catalytic beta chain [Synechococcus...	187.0	[0..24]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALQASIAY SFPISSPAAS PRRFSRVIRA QADPSDKSME VMRKFSEQFC RKSDTYFCVD  60
   61 KSVTAVVIKG LADHRDTLGA PLCPCRHYDD KEAEAKQGFW NCPCVPMRER KECHCMLFLT 120
  121 PDNDFAGKEQ TITLDEIREV TSNM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1dj7A
Description:	Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits